Dimarchopoulou, D., J. Pineda, R. Ji, B. Worm, and Lotze H (2025). Historical versus recent trends in the tropicalization of fisheries catches along a latitudinal temperature gradient. MAR ECOL PROG SER 769:125- 145 https:\/\/doi.org\/10.3354\/meps14932<\/a><\/p>\n Pineda J, Tepolt CK, Starczak V, Alatalo P, Shapiro S (2024) Concentration and condition of American lobster postlarvae in convergences. FISH OCEANOGR 33: 1-17. https:\/\/doi.org\/10.1111\/fog.1265 <\/a>\u00a0PDF<\/a><\/p>\n Weinstock JB, Reyns N, Swiderski M, Flerchinger D, Pineda J (2023) Periodicity in Chthamalus fissus<\/em> reproduction does not guarantee periodicity in settlement. MAR ECOL PROG SER 718:53-67. https:\/\/doi.org\/10.3354\/meps14386<\/a><\/p>\n Yamhure G.M., Reyns N., and Pineda J. 2021. High larval concentrations and onshore transport of barnacle cyprids associated with thermal stratification. FRONTIERS IN MARINE SCIENCE 8:1569. https:\/\/doi.org\/10.3389\/fmars.2021.748389 \u00a0<\/a>PDF<\/a><\/p>\n Pineda, J., Rouse, S., Starczak, V., Helfrich, K. and Wiley, D. (2020), Response of small sharks to nonlinear internal waves. Limnol Oceanogr, 65: 707-716. https:\/\/doi.org\/10.1002\/lno.11341.<\/a> PDF<\/a><\/p>\n Hagerty M, Reyns N, Pineda J, Govindarajan A (2019) Diversity and distribution of nearshore barnacle cyprids in Southern California through the 2015-16 El Ni\u00f1o PeerJ 7:e7186. PDF<\/a><\/p>\n Hagerty ML, Reyns N, Pineda J (2018) Constrained nearshore larval distributions and thermal stratification. Mar Ecol Prog Ser 595:105-122. https:\/\/doi.org\/10.3354\/meps12561.<\/a> PDF<\/a><\/p>\n Pineda, J., Reyns, N. and Lentz, S.J. (2018), Reduced barnacle larval abundance and settlement in response to large\u2010scale oceanic disturbances: Temporal patterns, nearshore thermal stratification, and potential mechanisms. Limnol Oceanogr, 63: 2618-2629. https:\/\/doi.org\/10.1002\/lno.10964.<\/a> PDF<\/a><\/p>\n Pineda, J. and Reyns, N., Larval transport in the coastal zone: biological and physical processes. In. Evolutionary Ecology of Marine Invertebrate Larvae. Edited by Tyler J. Carrier, Adam M. Reitzel, and Andreas Heyland: Oxford University Press (2018). \u00a9 Oxford University Press. DOI: 10.1093\/oso\/9780198786962.003.0011. PDF<\/a><\/p>\n Lentz SJ, JH Churchill, KA Davis, JT Farrar, J Pineda, V Starczak (2016). The characteristics and dynamics of wave-driven flow across a platform coral reef in the Red Sea. J. Geoph. Res. Oceans., 121:1360-1376.<\/p>\n Pineda et al. (2016), A crab swarm at an ecological hotspot: patchiness and population density from AUV observations at a coastal, tropical seamount. PeerJ 4:e1770; DOI 10.7717\/peerj.1770. PDF<\/a><\/p>\n Govindarajan et al. (2015), Phylogeographic structure and northward range expansion in the barnacleChthamalus fragilis.PeerJ 3:e926;DOI 10.7717\/peerj.926. PDF<\/a><\/p>\nAnnette F. Govindarajan, Jes\u00fas Pineda, Mike Purcell, John A. Breier, Species- and stage-specific barnacle larval distributions obtained from AUV sampling and genetic analysis in Buzzards Bay, Massachusetts, USA, Journal of Experimental Marine Biology and Ecology, Mazzuco, A.C.A., Christofoletti, R.A., Pineda, J. et al.<\/i> Temporal variation in intertidal community recruitment and its relationships to physical forcings, chlorophyll-a<\/i> concentration and sea surface temperature. Mar Biol<\/i> 162, 1705-1725 (2015). https:\/\/doi.org\/10.1007\/s00227-015-2689-6. PDF<\/a><\/p>\n Pineda, J., V. Starczak, J. C. B. da Silva,K. Helfrich, M. Thompson, and D. Wiley(2015), Whales and waves: Humpbackwhale foraging response and theshoaling of internal waves atStellwagen Bank,J. Geophys. Res.Oceans,120, doi:10.1002\/2014JC010564. PDF<\/a><\/p>\n Gyory, Joanna & Pineda, Jes\u00fas & Solow, Andrew. (2013). Turbidity triggers larval release by the intertidal barnacle Semibalanus balanoides. Marine Ecology Progress Series. 476. 141-151. 10.3354\/meps10186. PDF<\/a><\/p>\n Pineda, Jes\u00fas, Starczak, Victoria, Tarrant, Ann, Blythe, Jonathan, Davis, Kristen, Farrar, Tom, Berumen, Michael, da Silva, Jos\u00e9 C. B., (2013), Two spatial scales in a bleaching event: Corals from the mildest and the most extreme thermal environments escape mortality, Limnology and Oceanography<\/i>, 58, doi: 10.4319\/lo.2013.58.5.1531. PDF<\/a><\/p>\n Blythe J, Da Silva JCB, Pineda J (2011) Nearshore, seasonally persistent fronts in sea surface temperature on Red Sea tropical reefs. ICES J Mar Sci 68:1827-1832. PDF<\/a><\/p>\n Davis K, Lentz S, Pineda J, Farrar J, Starczak V, Churchill J (2011) Observations of the thermal environment on Red Sea platform reefs: a heat budget analysis. Coral Reefs 30:25-36. PDF<\/a><\/p>\n DiBacco C, Fuchs H, Pineda J, Helfrich K (2011) Swimming behavior and velocities of barnacle cyprids in a downwelling flume. Mar Ecol Prog Ser 433:131-148. PDF<\/a><\/p>\n Gyory J, Pineda J (2011) High-frequency observations of early-stage larval abundance: Do winter storms trigger synchronous larval release in Semibalanus balanoides? Marine Biology 158:1581-1589. PDF<\/a><\/p>\n Magalhaes JM, Ara\u00fajo IB, Da Silva JCB, Grimshaw R, Davis K, Pineda J (2011) Atmospheric gravity waves in the Red Sea: a new hot-spot. Nonlin Proc Geophys 18:71-79. PDF<\/a><\/p>\n Starczak VR, P\u00e9rez-Brunius P, Levine HE, Gyory J, Pineda J (2011) The role of season and salinity in influencing barnacle distribution in two adjacent coastal mangrove lagoons. Bull Mar Sci 87:275-299. PDF<\/a><\/p>\n JPineda J, Porri F, Starczak VR, Blythe J (2010) Causes of decoupling between larval supply and settlement and consequences for understanding recruitment and population connectivity. J Exp Mar Biol Ecol 392:9-21, https:\/\/doi.org\/10.1016\/j.jembe.2010.04.008. PDF<\/a><\/p>\n Tapia, F., DiBacco, C., Jarrett, J.N., Pineda, J. (2010). Vertical distribution of barnacle larvae at a fixed nearshore station in southern California : stage-specific and diel patterns. Estuar. Coast. Shelf Sci. 86, 265-270. PDF<\/a><\/p>\n Blythe, JN & Pineda, Jes\u00fas. (2009). Habitat selection at settlement endures in recruitment time-series. Marine Ecology Progress Series. 396. 77-84. 10.3354\/meps08309. PDF<\/a><\/p>\n Pineda, J., Reyns, N.B. and Starczak, V.R. (2009), Complexity and simplification in understanding recruitment in benthic populations. Popul Ecol, 51: 17-32. https:\/\/doi.org\/10.1007\/s10144-008-0118-0<\/a> PDF<\/a><\/p>\n Scotti A, Beardsley RC, Butman B, Pineda J (2008) Shoaling of nonlinear internal waves in Massachusetts Bay. J Geophys Res 113:18. PDF<\/a><\/p>\n Cowen, R.K., G. Gawarkiewicz, J. Pineda, S.R. Thorrold, and F.E. Werner. 2007. Population connectivity in marine systems: an overview. Oceanography 20:14-21. PDF<\/a><\/p>\n P\u00e9rez-Brunius, P., M. L\u00f3pez, A. Pares-Sierra, and J. Pineda. 2007. Comparison of upwelling indices off Baja California derived from three different wind data sources. CalCOFI Reports 48:204-214. PDF<\/a><\/p>\n Pineda J, Hare JA, Sponaugle S (2007) Larval dispersal and transport in the coastal ocean and consequences for population connectivity. Oceanography 20:22-39. PDF<\/a><\/p>\n Scotti, A. and J. Pineda (2007). Plankton accumulation and transport in propagating nonlinear internal fronts. Journal of Marine Research <\/em>65: 117-145. PDF<\/a><\/p>\n Tapia, F. J., & Pineda, J. (2007). Stage-specific distribution of barnacle larvae in nearshore waters: potential for limited dispersal and high mortality rates. Marine Ecology Progress Series<\/i>, 342<\/i>, 177-190. PDF<\/a><\/p>\n P\u00e9rez-Brunius, P, M. Lopez M, and J. Pineda (2006) Hydrographic conditions near the coast of northwestern Baja California: 1997 to 2004. Continental Shelf Research<\/em> 26:885-901. PDF<\/a><\/p>\n Pineda, J., Starczak, V., & Stueckle, T. A. (2006). Timing of successful settlement: demonstration of a recruitment window in the barnacle Semibalanus balanoides. Marine Ecology Progress Series<\/i>, 320<\/i>, 233-237. PDF<\/a><\/p>\n Ladah, L., F. Tapia F, J. Pineda, and M. Lopez (2005) Spatially heterogeneous, synchronous settlement of Chthamalus<\/em> spp. larvae in northern Baja California. Marine Ecology Progress Series<\/em> 302:177-185. PDF<\/a><\/p>\n Pineda, J., DiBacco, C., & Starczak, V. (2005). Barnacle larvae in ice: survival, reproduction, and time to postsettlement metamorphosis. Limnology and Oceanography<\/i>, 50<\/i>(5), 1520-1528. PDF<\/a><\/p>\n Scotti, A., & Pineda, J. (2004). Observation of very large and steep internal waves of elevation near the Massachusetts coast. Geophysical research letters<\/i>, 31<\/i>(22). PDF<\/a><\/p>\n Tapia, F., J. Pineda, F. Ocampo-Torres, H. Fuchs, E. Parnell, P. Montero and S. Ramos (2004). High-frequency observations of wind-forced onshore transport at a coastal site in Baja California. Continental Shelf Research<\/em> 24, 1573-1585. PDF<\/a><\/p>\n Harding, K. C., T. H\u00e4rk\u00f6nen, and J. Pineda. 2003. Estimating quasi extinction risk of European harbour seals: reply to Lonergan & Harwood. Ecology Letters <\/i> 6:894-897. PDF<\/a><\/p>\n Helfrich, K. and J. Pineda. (2003). Accumulation of particles in propagating fronts. Limnology and Oceanography <\/em> 48: 1509-1520. PDF<\/a><\/p>\n Kingsford, M. J., J. Leis, A. L. Shanks, K. Lindeman, S. Morgan, and J. Pineda. 2002. Sensory environments, larval abilities and local self-recruitment. Bulletin of Marine Science<\/i> 49:309-340. PDF<\/a><\/p>\n Pineda, J., & L\u00f3pez, M. (2002). Temperature, stratification and barnacle larval settlement in two Californian sites. Continental Shelf Research<\/i>, 22<\/i>(8), 1183-1198. PDF<\/a><\/p>\n Pineda J, Riebensahm D, Medeiros-Bergen D (2002) Semibalanus balanoides<\/em> in winter and spring: larval concentration, settlement, and substrate occupancy. Marine Biology<\/em> (Berl) 140:789-800. PDF<\/a><\/p>\n Sponaugle, S., R. K. Cowen, A. L. Shanks, S. G. Morgan, J. Leis, J. Pineda, G. Boehlert, M. J. Kingsford, K. Lindeman, C. Grimes, and J. L. Munro. 2002. Predicting self-recruitment in marine populations: Biophysical correlates and mechanisms. Bulletin of Marine Science<\/i> 49:341-375. PDF<\/a><\/p>\n Levin, L.A., R.J. Etter, M.A. Rex, A.J. Gooday, C.R. Smith, J. Pineda, C.T. Stuart, R.R. Hessler, and D. Pawson (2001). Environmental influences on regional deep-sea species diversity. Annual Review of Ecology and Systematics <\/em> 32:51-93. PDF<\/a><\/p>\n Souza, A. and J. Pineda. 2001. Tidal mixing modulation of sea surface temperature and diatom abundance in Southern California. Continental Shelf Research <\/em>21: 651-666. PDF<\/a><\/p>\n Pineda, J. (2000). Linking larval settlement to larval transport: assumptions, potentials, and pitfalls. Oceanography of the eastern Pacific<\/i>, 1<\/i>(2000), 84-105. PDF<\/a><\/p>\n Select Publications 2025 Dimarchopoulou, D., J. Pineda, R. Ji, B. Worm, and Lotze H (2025). Historical versus recent trends in the tropicalization of fisheries catches along a latitudinal temperature gradient. MAR ECOL PROG SER 769:125- 145 https:\/\/doi.org\/10.3354\/meps14932 2024 Pineda J, Tepolt CK, Starczak V, Alatalo P, Shapiro S (2024) Concentration and condition of American lobster…<\/p>\n","protected":false},"author":31,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www2.whoi.edu\/site\/pinedalab\/wp-json\/wp\/v2\/pages\/23"}],"collection":[{"href":"https:\/\/www2.whoi.edu\/site\/pinedalab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www2.whoi.edu\/site\/pinedalab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www2.whoi.edu\/site\/pinedalab\/wp-json\/wp\/v2\/users\/31"}],"replies":[{"embeddable":true,"href":"https:\/\/www2.whoi.edu\/site\/pinedalab\/wp-json\/wp\/v2\/comments?post=23"}],"version-history":[{"count":3,"href":"https:\/\/www2.whoi.edu\/site\/pinedalab\/wp-json\/wp\/v2\/pages\/23\/revisions"}],"predecessor-version":[{"id":1412,"href":"https:\/\/www2.whoi.edu\/site\/pinedalab\/wp-json\/wp\/v2\/pages\/23\/revisions\/1412"}],"wp:attachment":[{"href":"https:\/\/www2.whoi.edu\/site\/pinedalab\/wp-json\/wp\/v2\/media?parent=23"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}2024<\/h3>\n
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\nVolume 472, 2015, Pages 158-165, ISSN 0022-0981, https:\/\/doi.org\/10.1016\/j.jembe.2015.07.012. PDF<\/a>\n2013<\/h3>\n
2011<\/h3>\n
2010<\/h3>\n
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1999<\/h3>\nPineda, J. (1999). Circulation and larval distribution in internal tidal bore warm fronts. Limnology and Oceanography<\/i>, 44<\/i>(6), 1400-1414. PDF<\/a>\n
1998<\/h3>\nPineda, J., & Caswell, H. (1998). Bathymetric species-diversity patterns and boundary constraints on vertical range distributions. Deep Sea Research Part II: Topical Studies in Oceanography<\/i>, 45<\/i>(1-3), 83-101. PDF<\/a>\n
1997<\/h3>\nPineda, J., & Caswell, H. (1997). Dependence of settlement rate on suitable substrate area. Marine biology<\/i>, 129<\/i>(3), 541-548. PDF<\/a>\n
1995<\/h3>\nPineda, J. 1995. An internal tidal bore regime at nearshore stations along western USA: predictable upwelling within the lunar cycle. Continental Shelf Research <\/i>15:1023-1041. PDF<\/a>\n
1994<\/h3>\nPineda, J. (1994). Internal tidal bores in the nearshore: Warm-water fronts, seaward gravity currents and the onshore transport of neustonic larvae. Journal of Marine Research<\/i>, 52<\/i>(3), 427-458. PDF<\/a>\nPineda, J. (1994). Spatial and temporal patterns in barnacle settlement rate along a southern California rocky shore. Marine Ecology-Progress Series<\/i>, 107<\/i>, 125-125. PDF<\/a>\n
1993<\/h3>\nMarquet P., M. J. Fortin, J. Pineda, D.O. Wallin, J. Clark, Y. Wu, S. Bollens, C. Jacobi and R.D. Holt (1993) Ecological and evolutionary consequences of patchiness: a marine-terrestrial perspective. Pp. 277-304 In: Patch Dynamics<\/em>, S. Levin, T. Powell and J. H. Steele, editors, Springer-Verlag, Berlin. PDF<\/a>\nPineda, J. 1993. Boundary effects on the vertical ranges of deep-sea benthic species. Deep-Sea Research<\/i> 40: 2179-2192. PDF<\/a>\n
1992<\/h3>\nPineda, J. (1992). Mareas internas y transporte larvario. Investigaci\u00f3n y Ciencia <\/em>287 44-45 (Spanish edition of Scientific American<\/em>).\n
1991<\/h3>\nPineda, J. (1991). Predictable upwelling and the shoreward transport of planktonic larvae by internal tidal bores. Science<\/i>, 253<\/i>(5019), 548-549. PDF<\/a>\n
1989<\/h3>\nPineda, J. and A. Escofet (1989). Selective effects of disturbance on populations of sea anemones from northern Baja California, Mexico. Marine Ecology Progress Series<\/em> 55: 55-62. PDF<\/a>\n\n","protected":false},"excerpt":{"rendered":"