{"id":568,"date":"2025-03-17T11:36:00","date_gmt":"2025-03-17T15:36:00","guid":{"rendered":"https:\/\/www2.whoi.edu\/site\/saito-lab\/?page_id=568"},"modified":"2025-04-16T11:08:16","modified_gmt":"2025-04-16T15:08:16","slug":"software-tools","status":"publish","type":"page","link":"https:\/\/www2.whoi.edu\/site\/saito-lab\/software-tools\/","title":{"rendered":"Software &amp; Tools"},"content":{"rendered":"\n\n\t<h1>Software &amp; Tools<\/h1>\n\t<h2>Ocean Protein Portal<\/h2>\n<p>The Ocean Protein Portal (OPP) is a data sharing platform for ocean metaproteomics data.<\/p>\n\t\t\t<a href=\"https:\/\/oceanproteinportal.org\/\" target=\"_self\" role=\"button\" rel=\"noopener\">\n\t\t\t\t\t\t\tGo to Portal\n\t\t\t\t\t<\/a>\n\t<h2>Metalloproteome Viewer Prototype (2025)<\/h2>\n<p>Explore the metalloproteomes of various organisms studied by the Saito Lab.<\/p>\n<p><a href=\"https:\/\/nam02.safelinks.protection.outlook.com\/?url=https%3A%2F%2Fgithub.com%2Fmaksaito%2FMetalloproteomic-Viewer&amp;data=05%7C02%7Cdpandya%40whoi.edu%7Cfa43181493234e8c8ce408dd7c259706%7Cd44c5cc6d18c46cc8abd4fdf5b6e5944%7C0%7C0%7C638803223098365183%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=0c9dSNxzdYxAXdqHHfv9Q3EzXNC8yMeyOlIhephHvd4%3D&amp;reserved=0\" data-outlook-id=\"dc209628-7a1e-46d2-9629-6d993e4212c8\">Github page<\/a> for visualization and data analysis code<\/p>\n\t\t\t<a href=\"https:\/\/metallomeapp-launcher.streamlit.app\/\" target=\"_self\" role=\"button\" rel=\"noopener\">\n\t\t\t\t\t\t\tGo to Viewer\n\t\t\t\t\t<\/a>\n\t<h2>METATRYP: Database<\/h2>\n<p>METATRYP allows users to investigate the occurrence of tryptic peptides within the protein coding sequences predicted from genomes and metagenomes.<\/p>\n\t\t\t<a href=\"https:\/\/metatryp.whoi.edu\/\" target=\"_self\" role=\"button\" rel=\"noopener\">\n\t\t\t\t\t\t\tGo to Database\n\t\t\t\t\t<\/a>\n\t\n\n\n    \n    \n    <title>Station Mapper and Coordinate Checker<\/title>\n\n\n    <h2>Station Map and Coordinate Checker<\/h2>\n    <h4>Latitude\/Longitude Coordinate Conversion Calculator and Verification<\/h4>\n    <p>If there are multiple stations, place a comma between them (up to 20).<\/p>\n    \n        <label for=\"coordType\">Select coordinate type:<\/label>\n        \n            Decimal\n            DMS (degrees, minutes, seconds)\n        <br \/><br \/>\n            <label for=\"latDecimal\">Enter latitudes in decimal (comma separated, up to 20):<\/label>\n            <br \/><br \/>\n            <label for=\"lonDecimal\">Enter longitudes in decimal (comma separated, up to 20):<\/label>\n            <br \/><br \/>\n            <label for=\"latDeg\">Enter latitude degrees with optional hemisphere suffix (N, S) (comma separated, up to 20):<\/label>\n            <br \/><br \/>\n            <label for=\"latMin\">Enter latitude minutes (comma separated, up to 20):<\/label>\n            <br \/><br \/>\n            <label for=\"latSec\">Enter latitude seconds (comma separated, up to 20):<\/label>\n            <br \/><br \/>\n            <label for=\"lonDeg\">Enter longitude degrees with optional hemisphere suffix (E, W) (comma separated, up to 20):<\/label>\n            <br \/><br \/>\n            <label for=\"lonMin\">Enter longitude minutes (comma separated, up to 20):<\/label>\n            <br \/><br \/>\n            <label for=\"lonSec\">Enter longitude seconds (comma separated, up to 20):<\/label>\n            <br \/><br \/>\n        <button type=\"button\">Plot Coordinates<\/button><br \/><br \/>\n    \n\n\n\t<p><a href=\"https:\/\/nam02.safelinks.protection.outlook.com\/?url=https%3A%2F%2Focean-station-plotter.streamlit.app%2F&amp;data=05%7C02%7Cdpandya%40whoi.edu%7Cfa43181493234e8c8ce408dd7c259706%7Cd44c5cc6d18c46cc8abd4fdf5b6e5944%7C0%7C0%7C638803223098387683%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&amp;sdata=q%2FG%2FsvCx2ve7JlMrayKkpb5bQ6oDTy0VMHat7ptHryw%3D&amp;reserved=0\" data-outlook-id=\"0d2ac06a-6711-4fd6-82d3-05b751ead59a\"><strong>External Streamlit App Version <\/strong><\/a><strong>with more features\u00a0<\/strong><\/p>\n\n\n","protected":false},"excerpt":{"rendered":"<p>Software &amp; Tools Ocean Protein Portal The Ocean Protein Portal (OPP) is a data sharing platform for ocean metaproteomics data. Go to Portal Metalloproteome Viewer Prototype (2025) Explore the metalloproteomes of various organisms studied by the Saito Lab. Github page for visualization and data analysis code Go to Viewer METATRYP: Database METATRYP allows users to&hellip;<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www2.whoi.edu\/site\/saito-lab\/wp-json\/wp\/v2\/pages\/568"}],"collection":[{"href":"https:\/\/www2.whoi.edu\/site\/saito-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www2.whoi.edu\/site\/saito-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www2.whoi.edu\/site\/saito-lab\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www2.whoi.edu\/site\/saito-lab\/wp-json\/wp\/v2\/comments?post=568"}],"version-history":[{"count":3,"href":"https:\/\/www2.whoi.edu\/site\/saito-lab\/wp-json\/wp\/v2\/pages\/568\/revisions"}],"predecessor-version":[{"id":740,"href":"https:\/\/www2.whoi.edu\/site\/saito-lab\/wp-json\/wp\/v2\/pages\/568\/revisions\/740"}],"wp:attachment":[{"href":"https:\/\/www2.whoi.edu\/site\/saito-lab\/wp-json\/wp\/v2\/media?parent=568"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}