{"id":27,"date":"2017-03-23T17:18:39","date_gmt":"2017-03-23T21:18:39","guid":{"rendered":"https:\/\/www2.whoi.edu\/staff\/template-blue-prepop\/?page_id=27"},"modified":"2020-10-22T13:19:54","modified_gmt":"2020-10-22T17:19:54","slug":"publications","status":"publish","type":"page","link":"https:\/\/www2.whoi.edu\/staff\/hsosik\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n\t

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Publications<\/h1>\n

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Muller-Karger, F., E. Hestir, C. Ade. K. Turpie, D. Roberts, D. Siegel, R. Miller, D. Humm, N. Izenberg, M. Keller, F. Morgan, R. Frouin, A. Dekker, R. Gardner, J Goodman, B. Schaeffer, B. Franz, N. Pahlevan, A. Mannino, J. Concha, S.G.Ackleson, K. Cavanaugh, A. Romanou, M. Tzortziou, E. Boss, R. Pavlick, A. Freeman, C. Rousseaux, J. Dunne, M. Long, E. Klein, G.A. McKinley, R. Letelier, M. Kavanaugh, M. Roffer, J. Goes, A. Bracher, K.R. Arrigo, H. Dierssen, X. Zhang, F. Davis, B. Best, R. Guralnick, J. Moisan, H.M. Sosik, R. Kudela, C.B. Mouw, A. Barnard, S. Palacios, C. Roesler, E. Drakou, and W. Appeltans. 2018. Satellite sensor requirements for monitoring essential biodiversity variables of coastal ecosystems<\/a>. Ecological Applications. doi:10.1002\/eap.1682<\/p>\n

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Kalmbach, A., Sosik, H. M., Dudek, G., & Girdhar, Y. 2017. Learning Seasonal Phytoplankton Communities with Topic Models<\/a>. In OCEANS MTS\/IEEE. Anchorage. In press.<\/p>\n

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Olson, R.J., A. Shalapyonok, D.J. Kalb, S.W. Graves and H.M. Sosik. 2017. Imaging FlowCytobot modified for high throughput by in-line acoustic focusing of sample particles<\/a>. Limnology and Oceanography: Methods. DOI: 10.1002\/lom3.10205.<\/p>\n

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Kalmbach, A., Y. Girdhar, H.M. Sosik, and G. Dudek. 2017. Phytoplankton hotspot prediction with an unsupervised spatial community model<\/a>. In 2017 IEEE International Conference on Robotics and Automation (ICRA) (pp. 4906\u20134913). IEEE. http:\/\/doi.org\/10.1109\/ICRA.2017.7989568<\/p>\n

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Campbell, L., D.W. Henrichs, E.E. Peacock, J. Futrelle, and H.M. Sosik. 2017. Imaging FlowCytobot provides novel insights on phytoplankton community dynamics. In Proenca, L. A. O. and Hallegraeff, G. (eds). Proceedings of the 17th International Conference on Harmful Algae. International Society for the Study of Harmful Algae and Intergovernmental Oceanographic Commission of UNESCO 2017. ISBN 978-87-990827-6-6.<\/p>\n

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Hunter-Cevera, K.R., M.G. Neubert, R.J. Olson, A.R. Solow, A. Shalapyonok and H.M. Sosik. 2016. Physiological and ecological drivers of early spring blooms of a coastal phytoplankter<\/a>. Science. 354: 326-329. DOI: 10.1126\/science.aaf8536\u00a0Abstract<\/a>.<\/p>\n

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Lambert, B.S, R.J. Olson, and H.M. Sosik. 2016. A fluorescence-activated cell sorting subsystem for the Imaging FlowCytobot<\/a>. Limnology and Oceanography: Methods. 15: 94\u2013102, DOI: 10.1002\/lom3.10145<\/p>\n

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Brownlee, E.F., R.J. Olson, and H.M. Sosik. 2016. Microzooplankton community structure investigated with imaging flow cytometry and automated live-cell staining<\/a>. Marine Ecology Progress Series. 550: 65\u201381. DOI:\u00a010.3354\/meps11687<\/p>\n

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Smith, Jr., W.O, D.J. McGillicuddy, Jr., E.B. Olson, V. Kosnyrev, E.E. Peacock, and H.M. Sosik. 2016. Mesoscale variability in intact and ghost colonies of Phaeocystis antarctica<\/em> in the Ross Sea: Distribution and abundance<\/a>. Journal of Marine Systems. DOI: 10.1016\/j.jmarsys.2016.05.007<\/p>\n

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Valente, A., S. Sathyendranath, V. Brotas, S. Groom, M. Grant, M. Taberner, D. Antoine, R. Arnone, W.M. Balch, K. Barker, R. Barlow, S. B\u00e9langer, J.-F. Berthon, S. Besiktepe, V. Brando, E. Canuti, F. Chavez, H. Claustre, R. Crout, R. Frouin, C. Garc\u00eda-Soto, S.W. Gibb, R. Gould, S. Hooker, M. Kahru, H. Klein, S. Kratzer, H. Loisel, D. McKee, B.G. Mitchell, T. Moisan, F. Muller-Karger, L. O’Dowd, M. Ondrusek, A.J. Poulton, M. Repecaud, T. Smyth, H.M. Sosik, M. Twardowski, K. Voss, J. Werdell, M. Wernand, and G. Zibordi. 2016. A compilation of global bio-optical in situ data for ocean-colour satellite applications, Earth System Science Data<\/a>. DOI: 10.5194\/essd-8-235-2016.<\/p>\n

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Brosnahan, M.L., L. Velo-Suarez, D.K. Ralston, S.E. Fox. T.R. Sehein, A. Shalapyonok, H.M. Sosik, R.J. Olson, and D.M. Anderson. 2015. Rapid growth and concerted sexual transitions by a bloom of the harmful dinoflagellate Alexandrium<\/em> fundyense<\/em> (Dinophyceae)<\/a>. Limnology and Oceanography. 60: 2059\u20132078.\u00a0DOI:\u00a010.1002\/lno.10155.<\/p>\n

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Zhang, X., Y. Huot, A. Bricaud, and H.M. Sosik. 2015. Inversion of spectral absorption coefficients to infer phytoplankton size classes, chlorophyll concentration, and detrital matter<\/a>. Applied Optics. 54: 5805-5816. DOI: 10.1364\/AO.54.005805<\/p>\n

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Hunter-Cevera, K.R., A.F. Post, and H.M. Sosik. 2015. Diversity of Synechococcus<\/em> at the Martha’s Vineyard Coastal Observatory: Insights from culture isolations, clone libraries, and flow cytometry<\/a>. Microbial Ecology. DOI: 10.1007\/s00248-015-0644-1.<\/p>\n

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Laney, S.R. and H.M. Sosik. 2014. Phytoplankton assemblage structure in and around a massive under-ice bloom in the Chukchi Sea<\/a>. Deep-Sea Research Part II. 105:30-41. DOI:\u00a010.1016\/j.dsr2.2014.03.012.<\/p>\n

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Arrigo, K.R., D.K. Perovich, R.S. Pickart, Z.W. Brown, G.L. van Dijken, K.E. Lowry, M.M. Mills, M.A. Palmer, W.M. Balch, N.R. Bates, C.R. Benitez-Nelson, E. Brownlee, K.E. Frey, S.R. Laney, J. Mathis, A. Matsuoka, B.G. Mitchell, G.W.K. Moore, R.A. Reynolds, H.M. Sosik, and J.H. Swift. 2014. Phytoplankton blooms beneath the sea ice in the Chukchi Sea<\/a>. Deep-Sea Research Part II. 105:1-16. DOI:\u00a010.1016\/j.dsr2.2014.03.018.<\/p>\n

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Keeling, P. J., F. Burki, H. M. Wilcox, B. Allam, E. E. Allen, L. A. Amaral-Zettler, E. V. Armbrust, J. M. Archibald, A. K. Bharti, C. J. Bell, B. Beszteri, K. D. Bidle, C. T. Cameron, L. Campbell, D. A. Caron, R.A. Cattolico, J. L. Collier, K. Coyne, S. K. Davey, P. Deschamps, S. T. Dyhrman, B. Edvardsen, R. D. Gates, C. J. Gobler, S. J. Greenwood, S. M. Guida, J. L. Jacobi, K. S. Jakobsen, E. R. James, B. Jenkins, U. John, M. D. Johnson, A. R. Juhl, A. Kamp, L. A. Katz, R. Kiene, A. Kudryavtsev, B. S. Leander, S. Lin, C. Lovejoy, D. Lynn, A. Marchetti, G. McManus, A. Nedelcu, S. Menden-Deuer, C. Miceli, T. Mock, M. Montresor, M. A. Moran, S. Murray, G. Nadathur, S. Nagai, P. B. Ngam, B. Palenik, J. Pawlowski, G. Petroni, G. Piganeau, M. C. Posewitz, K. Rengefors, G. Romano, M. E. Rumpho, T. Rynearson, K. B. Schilling, D. C. Schroeder, A. G. B. Simpson, C. H. Slamovits, D. R. Smith, G. J. Smith, S. R. Smith, H. M. Sosik, P. Stief, E. Theriot, S.N. Twary, P. E. Umale, D. Vaulot, B. Wawrik, G. L. Wheeler, W. H. Wilson, Y. Xu, A. Zingone, and A. Z. Worden. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing<\/a>. PLoS Biology. 12(6): e1001889. DOI: 10.1371\/ journal.pbio.1001889.<\/p>\n

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Muller-Karger, F.E., M.T. Kavanaugh, E. Montes, W.M. Balch, M. Breitbart, F.P. Chavez, S.C. Doney, E.M. Johns, R.M. Letelier, M.W. Lomas, H.M. Sosik, and A.E. White. 2014. A framework for a marine biodiversity observing network within changing continental shelf seascapes<\/a>. Oceanography. 27:18\u201323.\u00a0DOI: 10.5670\/oceanog.2014.56.<\/p>\n

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Hunter-Cevera, K.R, M.G. Neubert, A.R. Solow, R.J. Olson, A. Shalapyopnok and H.M. Sosik. 2014. Diel size distributions reveal seasonal growth dynamics of a coastal phytoplankter<\/a>. Proceedings of the National Academy of Sciences of the United States of America. 111: 9852\u20139857. DOI:\u00a010.1073\/pnas.1321421111.<\/p>\n

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Peacock, E. E., R. J. Olson, and H. M. Sosik. 2014. Parasitic infection of the diatom Guinardia<\/em> delicatula<\/em>, a recurrent and ecologically important phenomenon on the New England Shelf<\/a>. Marine Ecology Progress Series. 503: 1-10. DOI: 10.3354\/meps10784. (Feature Article)<\/p>\n

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Fischer, A. D., E. A. Moberg, H. Alexander, E. F. Brownlee, K. R. Hunter-Cevera, K. J. Pitz, S. Z. Rosengard, and H. M. Sosik. 2014. Sixty years of Sverdrup: A retrospective of progress in the study of phytoplankton blooms<\/a>. Oceanography. 27: 222-235. Supplement Bibliography<\/a>.<\/p>\n

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Brosnahan, M. L., S. Farzon, B. A. Keafer, H. M. Sosik, R. J. Olson, and D. M. Anderson. Complexities of bloom dynamics in the toxic dinoflagellate Alexandrium<\/em> fundyense<\/em> revealed through DNA measurements by imaging flow cytometry coupled with species-specific rRNA probes<\/a>. Deep Sea Research Part II.<\/p>\n

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Duffy, J.E., L.A. Amaral-Zettler, D.G. Fautin, G. Paulay, T. A. Rynearson, H.M. Sosik, and J.J. Stachowizcz. 2013. Envisioning a national marine biodiversity observation network<\/a>. BioScience. 63: 350-361.<\/p>\n

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Pearl, M.R., J.A. Swanstrom, L.S. Bruckman, T.L. Richardson, T.J. Shaw, H.M. Sosik, and M.L. Myrick. 2013. Taxonomic classification of phytoplankton with multivariate optical computing, Part III: Demonstration<\/a>. Applied Spectroscopy. 67: 640-647.<\/p>\n

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Campbell, L. D.W. Henrichs, R.J. Olson and H.M. Sosik. 2013. Continuous automated imaging-in-flow cytometry for detection and early warning of Karenia<\/em> brevis<\/em> blooms in the Gulf of Mexico<\/a>. Environmental Science and Pollution Research. 10.1007\/s11356-012-1437-4<\/p>\n

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Fishman, J, L. T. Iraci , J. Al-Saadi, K. Chance, F. Chavez, M. Chin, P. Coble, C. Davis, P. M. DiGiacomo, D. Edwards, A.Eldering, J. Goes, J. Herman, C. Hu, D.J. Jacob, C. Jordan, S. R. Kawa; R. Key, X. Liu, S. Lohrenz; A. Mannino; V. Natraj, D. Neil, J. Neu, M. Newchurch, K. Pickering, J. Salisbury, H. Sosik, A. Subramaniam, M, Tzortziou, J. Wang, and M. Wang. 2012. Progress report on NASA’s GEO-CAPE mission: Fulfilling the mandate and meeting the challenges of the nation’s next generation of atmospheric composition and coastal ecosystem measurements<\/a>. Bulletin of the American Meteorological Society.10.1175\/BAMS-D-11-00201.1<\/p>\n

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Laney, S.R., R.J. Olson, and H.M. Sosik. 2012. Diatoms favor their younger daughters<\/a>. Limnology and Oceanography. 57: 1572-1578.<\/p>\n

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Arrigo, K.R., D.K. Perovich, R.S. Pickart, Z.W. Brown, G.L. van Dijken, K.E. Lowry, M.M. Mills, M.A. Palmer, W.M. Balch, F. Bahr, N.R. Bates, C. Benitze-Nelson, B. Bowler, E. Brownlee, J.K. Ehn, K.E. Frey, R. Garley, S.R. Laney, L. Lubelczyk, J. Mathis, A. Matsuoka, B.G. Mitchell, G.W.K. Moore, E. Ortega-Retuerta, S. Pal, C.M. Paloshenski, R.A. Reynolds, B. Schieber, H.M. Sosik, M. Stephens, and J.H. Swift. 2012. Massive phytoplankton blooms under Arctic sea ice<\/a>. Science. 336: 1408. Supplementory materials<\/a>.<\/p>\n

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Moberg, E.A. and H.M. Sosik. Distance maps to estimate cell volume from two-dimensional plankton images<\/a>. Limnology and Oceanography: Methods. 10: 278-288.<\/p>\n

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Hendrichs, D., H.M. Sosik, R.J. Olson, and L. Campbell. 2011. Phylogenetic analysis of Brachidinium<\/em> capitatum<\/em> (Dinophyceae) from the Gulf of Mexico indications membership in the Kareniaceae<\/a>. J. Phycol. 47: 366\u2013374.<\/p>\n

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Amaral-Zettler, L., J. E. Duffy, D. Fautin, G. Paulay, T. Rynearson, H. Sosik, and J. Stachowicz. 2011. Attaining Operational Marine Biodiversity Observation Network (BON): Synthesis Report<\/a>.<\/p>\n

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Sieracki, M.E. Benfield, M., Hanson, A., Davis, C., Pilskaln, C.H., Checkley, D., Sosik, H.M., Ashjian, C., Culverhouse, P., Cowen, R., Lopes, R., Balch, W., Irigoien, X. 2009. Optical plankton imaging and analysis systems for ocean observation<\/a>. OceanObs\u201909, 11 p. (peer-reviewed)<\/p>\n

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Campbell, L., Olson, R.J., Sosik, H.M., Abraham, A., Henrichs, D.W., Hyatt, C.J. Buskey, E.J. 2010. First harmful Dinophysis<\/em> (DINOPHYCEAE, DINOPHYSIALES) bloom in the US is revealed by automated imaging flow cytometry.<\/a> Journal of Phycology. 46: 66\u201375.<\/p>\n

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Hlista, B. L., H. M. Sosik, L. V. Martin Traykovski, R. D. Kenney, and M. J. Moore. 2009. Seasonal and inter-annual correlations between Right Whale distribution and fecundity and chlorophyll concentration in the Gulf of Maine, USA.<\/a> Marine Ecology Progress Series. 394: 289-302.<\/p>\n

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Moore, C., A. Barnard, P. Fietzek, M. R. Lewis, H. M. Sosik, S. White, and O. Zielinski. 2009. Optical tools for ocean monitoring and research.<\/a>\u00a0 Ocean Science. 5, 661\u2013684.<\/p>\n

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Sosik, H. M. 2008. Characterizing seawater constituents from optical properties.<\/a> In M. Babin, C. S. Roesler and J. J. Cullen [eds.], Real-time coastal observing systems for ecosystem dynamics and harmful algal blooms. UNESCO, in press. (peer reviewed)<\/p>\n

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Olson, R.J. and H.M. Sosik.\u00a0 2007.\u00a0 A submersible imaging-in-flow instrument to analyze nano- and microplankton:\u00a0 Imaging FlowCytobot.<\/a>\u00a0 Limnology and Oceanography: Methods.\u00a0 5: 195-203.<\/p>\n

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Sosik, H.M. and R.J. Olson.\u00a0 2007.\u00a0 Automated taxonomic classification of phytoplankton sampled with imaging-in-flow cytometry.<\/a>\u00a0 Limnology and Oceanography: Methods.\u00a0 5: 204-216.<\/p>\n

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Babin, M., J. J. Cullen, C. S. Roesler, P. L. Donaghay, G. J., Doucette, M. Kahru, M. R. Lewis, C. A. Scholin, M. E. Sieracki, and H.M. Sosik.\u00a0 2005.\u00a0 New approaches and technologies for observing harmful algal blooms.<\/a>\u00a0 Oceanography.\u00a0 18: 210-227.<\/p>\n

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Green, R. E. and H. M. Sosik.\u00a0 2004.\u00a0 Analysis of apparent optical properties and ocean color algorithms using measurements of seawater constituents in continental shelf surface waters.<\/a>\u00a0 Journal of Geophysical Research.\u00a0 109, C03026, doi:10.1029\/2003JC001977.<\/p>\n

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Green, R.E., H.M. Sosik, and R.J. Olson.\u00a0 2003.\u00a0 Contributions of phytoplankton and other particles to inherent optical properties in continental shelf waters.<\/a>\u00a0 Limnology and Oceanography.\u00a0 48: 2377-2391.<\/p>\n

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Green, R.E., H. M. Sosik, R. J. Olson, and M. D. DuRand.\u00a0 2003.\u00a0 Flow cytometric determination of size and complex refractive index for marine particles: comparison with bulk estimates.<\/a>\u00a0 Applied Optics.\u00a0 42: 526-541.<\/p>\n

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Hiscock, M.R., Marra, J., Smith, W.O., Jr., Goericke, R., Measures, C.I., Vink, S., Olson, R.J., Sosik, H.M., Barber, R.T.\u00a0 2003.\u00a0 Primary productivity and its regulation in the Pacific Sector of the Southern Ocean.<\/a>\u00a0 Deep-Sea Research II.\u00a0 50: 533-558.<\/p>\n

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Johnsen, S. and H. M. Sosik.\u00a0 2003.\u00a0 Cryptic coloration as a camouflage strategy in coastal waters.<\/a>\u00a0 Limnology and Oceanography.\u00a0 48: 1277-1288.<\/p>\n

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Martin Traykovski, L.V. and H. M. Sosik.\u00a0 2003.\u00a0 Feature-based classification of optical water types in the northwest Atlantic based on satellite ocean color data.<\/a>\u00a0 Journal of Geophysical Research.\u00a0 108: 3150, doi: 10.1029\/2001JC001172.<\/p>\n

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Olson, R. J., A. Shalapyonok, and H. M. Sosik.\u00a0 2003.\u00a0 An automated submersible flow cytometer for analyzing pico- and nanophytoplankton: FlowCytobot.<\/a>\u00a0 Deep-Sea Research I.\u00a0 50: 301-315.<\/p>\n

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Sosik, H.M, R.J. Olson, M.G. Neubert, and A.R. Solow.\u00a0 2003.\u00a0 Growth rates of coastal phytoplankton from time-series measurements with a submersible flow cytometer.<\/a>\u00a0 Limnology and Oceanography.\u00a0 48: 1756-1765.<\/p>\n

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DuRand, M. D., R. E. Green, H. M. Sosik, and R. J. Olson.\u00a0 2002.\u00a0 Diel variations in optical properties of Micromonas pusilla <\/em>(Prasinophyceae)<\/a>.\u00a0 Journal of\u00a0 Phycology.\u00a0 38: 1132-1142.<\/p>\n

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Finenko, Z. Z., T. Ya. Churilova, H. M. Sosik, and O. Basturk.\u00a0 2002.\u00a0 Variability of photosynthetic parameters of the surface phytoplankton in the Black Sea.<\/a>\u00a0 Oceanology.\u00a0 40: 53-67.\u00a0 (translated from Russian)<\/p>\n

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Sosik, H. M. and R. J. Olson.\u00a0 2002.\u00a0 Phytoplankton and iron limitation of photosynthetic efficiency in the Southern Ocean during late summer.<\/a>\u00a0 Deep-Sea Research I.\u00a0 49: 1195-1216.<\/p>\n

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Wiebe, P. H., T. K. Stanton, C. H. Greene, M. C. Benfield, H. M. Sosik, T. Austin, J. D. Warren, and T. Hammar.\u00a0 2002.\u00a0 BIOMAPER II: an integrated instrument platform for coupled biological and physical measurements in coastal and oceanic regimes.\u00a0 IEEE Journal of Oceanic Engineering.\u00a0 27: 700-716.<\/p>\n

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Gardner, W. D., J. C. Blakey, I. D. Walsh, M. J. Richardson, S. Pegau, J. R. V. Zaneveld, C. Roesler, M. Gregg, J. MacKinnon, H. M. Sosik, and A. J. Williams, III.\u00a0 2001.\u00a0 Optics, particles, stratification and storms on the New England continental shelf.<\/a>\u00a0 Journal of Geophysical Research.\u00a0 106: 9473-9497.<\/p>\n

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Sosik, H. M., R. E. Green, W. S. Pegau and C. S. Roesler.\u00a0 2001.\u00a0 Temporal and vertical variability in optical properties of New England shelf waters during late summer and spring.<\/a>\u00a0 Journal of Geophysical Research.\u00a0 106: 9455-9472.<\/p>\n

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Olson, R. J., H. M. Sosik, and A. Shalapyonok.\u00a0 2000.\u00a0 Effects of iron enrichment on phytoplankton in the Southern Ocean during late summer: Active fluorescence and flow cytometric analyses.<\/a>\u00a0 Deep-Sea Research II.\u00a0 47: 3181-3200.<\/p>\n

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Olson, R. J., H. M. Sosik, and A. M. Chekalyuk.\u00a0 1999.\u00a0 Photosynthetic characteristics of marine phytoplankton from pump-during-probe fluorometry of individual cells at sea.<\/a>\u00a0 Cytometry.\u00a0 37: 1-13.<\/p>\n

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Sosik, H. M.\u00a0 1999.\u00a0 Storage of marine particulate samples for light absorption measurements.<\/a>\u00a0 Limnology and Oceanography.\u00a0 44: 1139-1141.<\/p>\n

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Olson, R. J., A. M. Chekalyuk and H. M. Sosik.\u00a0 1996.\u00a0 Phytoplankton photosynthetic characteristics from fluorescence induction assays of individual cells.<\/a>\u00a0 Limnology and Oceanography.\u00a0 41: 1253-1263.<\/p>\n

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Sosik, H. M.\u00a0 1996.\u00a0 Bio-optical modeling of primary production: Consequences of variability in quantum yield and specific absorption<\/a>.\u00a0 Marine Ecological Progress Series.\u00a0 143: 225-238.<\/p>\n

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Sosik, H. M. and B. G. Mitchell.\u00a0 1995.\u00a0 Light absorption by phytoplankton, photosynthetic pigments and detritus in the California Current System.<\/a>\u00a0 Deep-Sea Research I.\u00a0 42: 1717-1748.<\/p>\n

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Sosik, H. M. and B. G. Mitchell.\u00a0 1994.\u00a0 Effects of temperature on growth and light absorption in Dunaliella tertiolecta.<\/a>\u00a0 Journal of Phycology.\u00a0 30: 833-840.<\/p>\n

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Sosik, H. M., M. Vernet and B. G. Mitchell.\u00a0 1992.\u00a0 A comparison of particulate absorption properties between high- and mid-latitude surface waters<\/a>.\u00a0 Antarctic Journal of the United States.\u00a0 27: 162-164.<\/p>\n

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Sosik, H. M. and B. G. Mitchell.\u00a0 1991.\u00a0 Absorption, fluorescence and quantum yield for growth in nitrogen-limited Dunaliella tertiolecta.<\/a>\u00a0 Limnology and Oceanography.\u00a0 36: 910-921.<\/p>\n

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Sosik, H. M., S. W. Chisholm and R. J. Olson.\u00a0 1989.\u00a0 Chlorophyll fluorescence from single cells: Interpretation of flow cytometric signals.<\/a>\u00a0 Limnology and Oceanography.\u00a0 34: 1749-1761.<\/p>\n

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OTHER PUBLICATIONS<\/strong><\/h1>\n

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Sosik, H.M., K.R. Hunter-Cevera, M.G. Neubert, R.J. Olson, A.R. Solow, A. Shalapyonok, E.T. Crockford, and E.E. Peacock. 2016. Data from: Physiological and ecological drivers of early spring blooms of a coastal phytoplankter<\/a>. Dryad Digital Repository. DOI: 10.5061\/dryad.jm8s7.<\/p>\n

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Sosik, H.M., J. Futrelle, E.F. Brownlee, E. Peacock, T. Crockford, & R.J. Olson. 2016. hsosik\/ifcb-analysis: IFCB-Analysis software system, initial formal release at v2 feature stage [Data set]<\/a>. Zenodo. DOI:\u00a010.5281\/zenodo.153978.<\/p>\n

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Sosik, H.M, E.E. Peacock, and E.F. Brownlee. 2015. WHOI-Plankton, annotated plankton images – data set for developing and evaluating classification methods<\/a>. DOI: 10.1575\/1912\/7341.<\/p>\n

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Yoder, J.A., C.O. Davis, H.M. Dierssen, F.E. Muller-Karger, A. Mahadevan, J. Pearlman and H.M. Sosik. 2015. A modern coastal ocean observing system using data from advanced satellite and in situ sensors \u2013 an example<\/a>. Report of the Ocean Observation Research Coordination Network In-situ-Satellite Observation Working Group. DOI: 10.1575\/1912\/7351.<\/p>\n

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Orenstein, E.C., O. Beijbom, E.E. Peacock, and H.M. Sosik. 2015. WHOI-Plankton – A large scale fine grained visual recognition benchmark dataset for plankton classification<\/a>. Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 2 pp.<\/p>\n

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Bracher, A., N. Hardman-Mountford, T. Hirata, S. Bernard, E. Boss, R. Brewin, A. Bricaud, V. Brotas, A. Chase, A. Ciotti, J.-K. Choi, L. Clementson, E. Devred, P. DiGiacomo, C. Dupouy, T. Hirawake, W. Kim, T. Kostadinov, E. Kwiatkowska, S. Lavender, T. Moisan, C. Mouw, S. Son, H. Sosik, J. Uitz, J. Werdell, and G. Zheng. 2015. Report on IOCCG Workshop. Phytoplankton Composition from Space: Towards a validation strategy for satellite algorithms<\/a>. NASA\/TM\u20132015-217528, NASA, Goddard Space Flight Center, Greenbelt, Maryland, 46 pp.<\/p>\n

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Sosik, H. M., S. Sathyendranath, J. Uitz, H. Bouman, and A. Nair. 2014. In situ methods of measuring phytoplankton functional types. In S. Sathyendranath and V. Stuart [eds.], Phytoplankton functional types from space<\/a>, Reports of the International Ocean-Colour Coordinating Group, No. 15. IOCCG, p. 21-38.<\/p>\n

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Sathyendranath, S., H.M. Sosik, J. Aiken, S. Alvain, R. Barlow, L. Clementson, C. Moulin, N. Hardman-Mountford, T. Hirata, J. Morales, A. Nair, C. Mouw, and V. Stuart. 2014. General Introduction. In S. Sathyendranath and V. Stuart [eds.], Phytoplankton functional types from space<\/a>, Reports of the International Ocean-Colour Coordinating Group, No. 15. IOCCG, p. 1-19.<\/p>\n

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Sathyendranath, S., R.J.W. Brewin, C. Hu, H.M. Sosik, and V. Stewart. 2014. General Discussion and Conclusion. In S. Sathyendranath and V. Stuart [eds.], Phytoplankton functional types from space<\/a>, Reports of the International Ocean-Colour Coordinating Group, No. 15. IOCCG, p. 125-134.<\/p>\n

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Sosik, H.M. 2014.\u00a0 Autobiographical sketch.\u00a0 Oceanography.\u00a0 27: 223. (Special issue on Women in Oceanography)<\/p>\n

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Sosik, H.M. and J. Futrelle. 2012. Informatics solutions for large ocean optics datasets<\/a>. Proceedings of Ocean Optics XXI.\u00a0 p. 1-7.<\/p>\n

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Piera, J., L. Campbell, H.M. Sosik, L, Harred, R.J. Olson, Torrecilla, E.1, and Ballabrera, J. 2012. Do we need photonic-based instruments to characterize multiscale processes in marine environments?<\/a>\u00a0 Proceedings of Ocean Optics XXI.\u00a0 p. 1-10.<\/p>\n

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Maffei, A., H.M. Sosik, and J. Futrelle. 2012. Building earth science cyberenvironments at the working collaboration level<\/a>. EarthCube community white paper.<\/p>\n

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Amaral-Zettler, L., J. E. Duffy, D. Fautin, G. Paulay, T. Rynearson, H. Sosik, and J. Stachowicz. 2011. Attaining Operational Marine Biodiversity Observation Network (BON): Synthesis Report<\/a>, http:\/\/www.nopp.org\/wp-content\/uploads\/2010\/03\/BON_SynthesisReport.pdf<\/p>\n

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Sieracki, M.E. Benfield, M., Hanson, A., Davis, C., Pilskaln, C.H., Checkley, D., Sosik, H.M., Ashjian, C., Culverhouse, P., Cowen, R., Lopes, R., Balch, W., Irigoien, X. 2008. Optical plankton imaging and analysis systems for ocean observation.<\/a> 2009. OceanObs\u201909, 11 p. (peer-reviewed)<\/p>\n

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Sosik, H.M. and R.J. Olson.\u00a0 2008.\u00a0 Phytoplankton community regulation on the New England Shelf: Insights from automated submersible flow cytometry.<\/a>\u00a0 Proceedings of Ocean Optics XIX, 12 pp.\u00a0<\/em><\/p>\n

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Campbell, L., R. J. Olson, and H. M. Sosik. \u00a02008. \u00a0First toxic Dinophysis<\/em> bloom observed in the Gulf of Mexico, USA.<\/a>Harmful Algae News 36: 10-11.<\/p>\n

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Lyon, P., R. Arnone, R. Gould, Z. Lee, P. Martinolich, S. Ladner, B. Casey, H. Sosik, D. Vandemark, H. Feng, R. Morrison.\u00a0 2007. Automated validation of satellite derived coastal optical products<\/a>. \u00a0In: R.J. Frouin (ed.), Proc. SPIE 6680.\u00a0 DOI: 10.1117\/12.736576.<\/p>\n

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Sosik, H.M. and R.J. Olson.\u00a0 2006. New technologies to acquire time series of phytoplankton community structure: submersible image-in-flow cytometry and automated taxonomic Classification<\/a>.\u00a0 Proceedings of Ocean Optics XVIII.\u00a0 p. 1-13.<\/p>\n

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Fredericks, J.J., J.H. Trowbridge, T.C. Austin, H.M. Sosik, R.J. Olson, P.A. Traykovski.\u00a0 2006.\u00a0 Martha’s Vineyard Coastal Observatory:\u00a0 Existing Infrastructure for interdisciplinary science.<\/a> Proceedings of the IEEE Fourth International Workshop on Scientific Use of Submarine Cables and Related Technologies; 4 pp.<\/p>\n

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Sosik, H.M.\u00a0 2005.\u00a0 Biographical sketch.\u00a0 Oceanography. 18: 213.<\/p>\n

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Johnsen, S. and H.M. Sosik. What does the ocean really look like?<\/a>\u00a0 Oceanus.\u00a0 43(2): 24-28.<\/p>\n

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Edson, J., Gallager, S., Hintsa, E., Olson, R., Preisig, J., Sosik, H., Traykovski, P. and Trowbridge, J.\u00a0 2004.\u00a0 Plugging In at the Martha’s Vineyard Coastal Observatory.<\/a>\u00a0 ORION newsletter.\u00a0 ORION Project Office. 1(2): 4-7.<\/p>\n

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Jahnke, R., Bane, J., Barnard, A., Barth, J., Chavez, F., Dam, H., Dever, E., DiGiacomo, P., Edson, J., Geyer, R., Glenn, S., Johnson, K., Moline, M., O’Donnell, J., Oltman-Shay, J., Persson, O., Schofield, O., Sosik, H., and Terrill, E.\u00a0 2004.\u00a0 Coastal Observatory Research Arrays: A Framework for Implementation Planning.<\/a>\u00a0 Report on the CoOP CORA Workshop.\u00a0 Skidaway Institute of Oceanography Technical Report Draft TR-03-01.\u00a0 69 pp.<\/p>\n

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Sosik, H.M., R.J. Olson, M.G. Neubert, A. Shalapyonok, and A.R. Solow.\u00a0 2002.\u00a0 Time series observations of a phytoplankton community monitored with a new submersible flow cytometer.<\/a>\u00a0 Proceedings of Ocean Optics XVI, 12 pp.<\/p>\n

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Morrison, J.R and Sosik, H.M.\u00a0 2002.\u00a0 Inherent optical properties in New England coastal waters: decomposition into contributions from optically important constituents.<\/a>\u00a0 Proceedings of Ocean Optics XVI, 10 pp.<\/p>\n

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Green, R.E., H.M. Sosik, and R.J. Olson.\u00a0 2002.\u00a0 The contribution of phytoplankton and non-phytoplankton particles to inherent and apparent optical properties in New England continental shelf waters.<\/a>\u00a0 Proceedings of Ocean Optics XVI, 11 pp.<\/p>\n

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Martin Traykovski, L.V., W.L. Miller and H.M. Sosik.\u00a0 2002.\u00a0 A new approach to evaluating spatial variability of photochemistry based on characterization of optical water type from satellites.<\/a>\u00a0 Proceedings of Ocean Optics XVI, 9 pp.<\/p>\n

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Mitchell, G., A. Bricaud, K. Carder, J. Cleveland, G. Ferrari, R. Gould, M. Kahru, M. Kishino, H. Maske, T. Moisan, L. Moore, N. Nelson, D. Phinney, R. Reynolds, H. Sosik, D. Stramski, S. Tassan, C. Trees, A. Weidemann, J. Weiland, and A. Vodacek.\u00a0 2000.\u00a0 Determination of spectral absorption coefficients of particles, dissolved material, and phytoplankton for discrete water samples<\/a>.\u00a0 In: Ocean optics protocols for satellite ocean color sensor validation, revision 2, G. S. Fargion and J. L. Mueller (eds.), NASA\/TM 2000-209966. NASA, Goddard Space Flight Center, Greenbelt, Maryland, p. 125-153.<\/p>\n

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Martin Traykovski, L. V. and H. M. Sosik.\u00a0 2000.\u00a0 Optical classification of northwest Atlantic water types based on satellite ocean colour data.<\/a>\u00a0 Proceedings of Ocean Optics XV.\u00a0 12 pp.<\/p>\n

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Sosik, H. M. and J. R. Morrison.\u00a0 2000.\u00a0 Analysis and visualization of inherent optical properties of the Gulf of Maine observed from a towed vehicle.<\/a>\u00a0 Proceedings of Ocean Optics XV.\u00a0 11 pp.<\/p>\n

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DuRand, M. D., R. E. Green, H. M. Sosik, and R.J. Olson.\u00a0 2000.\u00a0 Diel variations in optical properties of Micromonas pusilla, a prasinophyte.<\/a>\u00a0 Proceedings of Ocean Optics XV.\u00a0 11 pp.<\/p>\n

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Green, R. E., H. M. Sosik, M. D. DuRand, and R. J. Olson.\u00a0 2000.\u00a0 Comparison of refractive index estimated from single-cell and bulk optical properties.<\/a>\u00a0 Proceedings of Ocean Optics XV.\u00a0 9 pp.<\/p>\n

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Sosik, H.M., R.E. Green and R.J. Olson. \u00a01998. \u00a0Optical variability in coastal waters of the northwest Atlantic.<\/a>\u00a0 Proceedings of Ocean Optics XIV. \u00a014 pp.<\/p>\n

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Martin Traykovski, L. V. and H. M. Sosik.\u00a0 1998.\u00a0 Optical classification water types based on remotely-sensed ocean colour.<\/a>\u00a0 In: Ocean Optics XIV, S. G. Ackleson (ed.).\u00a0 12 pp.<\/p>\n

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Chekalyuk, A. M., R. J. Olson, and H. M. Sosik.\u00a0 1997.\u00a0 Pump-during-probe fluorometry of phytoplankton of phytoplankton: group specific photosynthetic characteristics from individual cell analysis<\/a>.\u00a0 In: Ocean Optics XIII, S. G. Ackelson and R. Frouin (eds.). Proc. SPIE 2963: 840-845.\u00a0DOI:10.1117\/12.266411.<\/p>\n

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Sosik, H. M.\u00a0 1995.\u00a0 The role of phytoplankton photophysiological variability in optical modeling of marine primary production.\u00a0 In: Proceedings of the International Colloquium on Photosynthesis and Remote Sensing, G. Guyot (ed.), EARSeL, pp. 251-259.<\/p>\n

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Sosik, H. M., M. Vernet and B. G. Mitchell. 1992. A comparison of particulate absorption properties between high- and mid-latitude surface waters<\/a>. Ant. J. U.S. 27: 162-164.<\/p>\n","protected":false},"excerpt":{"rendered":"

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