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Publications and Presentations

Recent Publications

  1. Liu, S., K. Longnecker, E. B. Kujawinski, K. Vergin, L. M. Bolaños, S. J. Giovannoni, R. Parsons, K. Opalk, E. Halewood, D. A. Hansell, R. Johnson, R. Curry and C. A. Carlson (2022). Linkages among dissolved organic matter export, dissolved metabolites, and associated microbial community structure response in the northwestern Sargasso Sea on a seasonal scale. DOI:10.3389/fmicb.2022.833252. Frontiers in Microbiology.
  2. Widner, B., M. C. Kido Soule, F. Ferrer-González, M. A. Moran and E. B. Kujawinski (2021). Quantification of amine- and alcohol-containing metabolites in saline samples using pre-extraction benzoyl chloride derivatization and ultra-high performance liquid chromatography tandem mass spectrometry (UHPLC MS/MS). Analytical Chemistry. 93: 4809-4817
  3. Foppe, K.S., E.B. Kujawinski, C. Duvallet, N. Endo, T.B. Erickson, P.R. Chai and M. Matus (2021). Analysis of 39 drugs and metabolites, including 8 glucuronide conjugates, in an upstream wastewater network via HPLC-MS/MS. Journal of Chromatography B. 1176: 122747.
  4. Liu, S., R. Parsons, K. Opalk, N. Baetge, S. Giovannoni, L. M. Bolaños, E. B. Kujawinski, K. Longnecker, Y. Lu, E. Halewood and C. A. Carlson (2020). Different carboxyl-rich alicyclic molecules proxy compounds select distinct bacterioplankton for oxidation of dissolved organic matter in the mesopelagic Sargasso Sea. Limnology and Oceanography 65:1532-1553.
  5. McLean, C. and E. B. Kujawinski (2020). AutoTuner: High fidelity, robust, and rapid parameter selection for metabolomics data processing. Analytical Chemistry. DOI: 10.1021/acs.analchem.9b04804.
  6. Longnecker, K. and E. B. Kujawinski (2020). Intracellular metabolites in marine microorganisms during an experiment evaluating microbial mortality. Metabolites 10: 105.
  7. Liu, Y., H. K. White, R. L. Simister, D. Waite, S. L. Lyons and E. B. Kujawinski (2020). Probing the chemical transformation of seawater-soluble crude oil components during microbial oxidation. ACS Earth and Space Chemistry. DOI: 10.1021/acsearthspacechem.9b00316.
  8. ED Evans, C Dai, S Isazadeh, S Park, C Ratti, EJ Alm (2020). Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites. PLoS computational biology 16 (6), e1008001.
  9. Longnecker, K., L. Oswald, M. C. K. Soule, G. A. Cutter, and E. B. Kujawinski. (2020). Organic sulfur: a spatially variable and understudied component of marine organic matter. Limnology and Oceanography Letters. 5:305-312
  10. Endo, N., Ghaeli, N., Duvallet, C. et al. (2020). Rapid Assessment of Opioid Exposure and Treatment in Cities through Robotic Collection and Chemical Analysis of Wastewater. J. Med. Toxicol. 16: 195–203
  11. Maas, A. E., S. Liu, L. M. Bolaños, B. Widner, R. J. Parsons, E. B. Kujawinski, L. B. Bercial and C. A. Carlson (2020). Migratory zooplankton excreta and its influences on prokaryotic communities. Frontiers in Marine Science. 7: 573268
  12. Ferrer-González, F. X., B. Widner, N. R. Holderman, J. Glushka, A. S. Edison, E. B. Kujawinski and M. A. Moran (2020). Resource partitioning of phytoplankton metabolites that support bacterial heterotrophy. ISME Journal. 15: 762-773
  13. Weber, L., M. Armenteros, M. C. Kido Soule, K. Longnecker, E. B. Kujawinski and A. Apprill (2020). Extracellular reef metabolites across the protected Jardines de la Reina, Cuba reef-system. Frontiers in Marine Science. 7:1063
  14. Fiore, C.L., H. Alexander, M.C. Kido Soule, E.B. Kujawinski (2021). A phosphate starvation response gene (psr1-like) is present and expressed in Micromonas pusilla and other marine algae. Aquatic Microbial Ecology. 86: 29-46
  15. Jimmy H.W. Saw, Takuro Nunoura, Miho Hirai, Yoshihiro Takaki, Rachel Parsons, Michelle Michelsen, Krista Longnecker, Elizabeth B. Kujawinski, Ramunas Stepanauskas, Zachary Landry, Craig A. Carlson, Stephen J. Giovannoni (2019). Pangenomics reveal diversification of enzyme families and niche specialization in globally abundant SAR202 bacteria. bioRxiv 692848; doi: https://doi.org/10.1101/692848.
  16. Mariana Matus, Claire Duvallet, Melissa Kido Soule, Sean M. Kearney, Noriko Endo, Newsha Ghaeli, Ilana Brito, Carlo Ratti, Elizabeth B. Kujawinski, Eric J. Alm (2019). 24-hour multi-omics analysis of residential sewage reflects human activity and informs public health. bioRxiv 728022; doi: https://doi.org/10.1101/728022
  17. Johnson, W. M., K. Longnecker, M. C. Kido Soule, W. A. Arnold, M. P. Bhatia, S. J. Hallam, B. A. S. Van Mooy and E. B. Kujawinski (2019). Metabolite composition of sinking particles differs from surface suspended particles across a latitudinal transect in the South Atlantic. Limnology and Oceanography http://doi.org/10.1002/lno.11255
  18. Glazer, L., M.C. Kido Soule, K. Longnecker, E.B. Kujawinski, N. Aluru (2018). Hepatic metabolite profiling of polychlorinated biphenyl (PCB)-resistant and sensitive populations of Atlantic killifish (Fundulus heteroclitus). Aquatic Toxicology 205: 114-122 https://doi.org/10.1016/j.aquatox.2018.10.007
  19. Longnecker, K., Sievert, S. M., Sylva, S. P., Seewald, J. S., & Kujawinski, E. B. (2018). Dissolved organic carbon compounds in deep-sea hydrothermal vent fluids from the East Pacific Rise at 9º50’N. Organic Geochemistry 125: 41-49 https://doi.org/10.1016/j.orggeochem.2018.08.004
  20. Brooker, M.R., K. Longnecker, E.B. Kujawinski, M.H. Evert, P.J. Mouser (2018). Discrete organic phosphorus signatures are evident in pollutant sources within a Lake Erie tributary. Environmental Science & Technology: 52:6771-6779 http://dx.doi.org/10.1021/acs.est.7b05703
  21. Götz, F., K. Longnecker, M. C. Kido Soule, K. W. Becker, J. McNichol, E. B. Kujawinski and S. M. Sievert (2018). Targeted metabolomics reveals proline as a major osmolyte in the chemolithoautotroph Sulfurimonas denitrificans. MicrobiologyOpen : 7:e586. http://dx.doi.org/10.1002/mbo3.586.
  22. Tolić, N., Y. Liu, A. Liyu, Y. Shen, M. M. Tfaily, E. B. Kujawinski, K. Longnecker, L.-J. Kuo, E. W. Robinson, L. Paša-Tolić and N. J. Hess (2017). Formularity: Software for automated formula assignment of natural and other organic matter from ultrahigh-resolution mass spectra. Analytical Chemistry 89: 12659-12665. http://dx.doi.org/10.1021/acs.analchem.7b03318
  23. Kujawinski, E.B., K. Longnecker, H. Alexander, S.T. Dyhrman, C.L. Fiore, S.T. Haley, and W.M. Johnson (2017). Phosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton. Limnology and Oceanography Letters 2: 119-129. http://dx.doi.org/10.1002/lol2.10043
  24. Longnecker, K. and E. B. Kujawinski (2017). Mining mass spectrometry data: Using new computational tools to find novel organic compounds in complex environmental mixtures. Organic Geochemistry 110:92-99. http://dx.doi.org/10.1016/j.orggeochem.2017.05.008
  25. Kujawinski, E.B. (2017). Cryospheric science: The power of glacial microbes. Nature Geosciences 10:329-330. http://dx.doi.org/10.1038/ngeo2933
  26. Johnson W.M., Kido Soule M.C., and Kujawinski E.B. (2017). Interpreting the impact of matrix on extraction efficiency and instrument response in a targeted metabolomics method. Limnology and Oceanography Methods 15: 417-428. http://dx.doi.org/10.1002/lom3.10181
  27. Fiore, C. L., C. J. Freeman and E. B. Kujawinski (2017). Sponge exhalent seawater contains a unique chemical profile of dissolved organic matter. PeerJ 5: e2870. http://dx.doi.org/10.7717/peerj.2870
  28. Sipler, R.E., C.T. E. Kellogg, T.L. Connelly, Q.N. Roberts, P.L. Yager, D.A. Bronk. 2017.Microbial Community Response to Terrestrially Derived Dissolved Organic Matter in the Coastal Arctic. Frontiers of Microbiology. 8: 1018. DOI: 10.3389/fmicb.2017.01018
  29. Shuvashish Kundu, Rebeka Fisseha, Annie L. Putman, Thom A. Rahn, Lynn R. Mazzoleni (2016). Molecular formula composition of β-caryophyllene ozonolysis SOA formed in humid and dry conditions, Atmospheric Environment, Volume 154, 2017, Pages 70-81, http://dx.doi.org/10.1016/j.atmosenv.2016.12.031.
  30. R. Griffith, M.C. Kido Soule, T.I. Eglinton, E.B. Kujawinski, and P.M. Gschwend (2016). Steroidal estrogen sources in a sewage-impacted coastal ocean. Environmental Science: Processes & Impacts18: 981-991, doi:10.1039/C6EM00127K (2016 Emerging Investigators issue; chosen as the featured cover article)
  31. Longnecker, K. and E. B. Kujawinski (2016). Using network analysis to discern compositional patterns in ultrahigh resolution mass spectrometry data of dissolved organic matter. Rapid Communications in Mass Spectrometry 30: 2388-2394. http://dx.doi.org/10.1002/rcm.7719.
  32. Elizabeth B. Kujawinski, Krista Longnecker, Katie L. Barott, Ralf J. M. Weber, Melissa C. Kido Soule (2016). Microbial community structure affects marine dissolved organic matter composition. Frontiers in Marine Science, doi: 10.3389/fmars.2016.00045
  33. Winifred M. Johnson, Melissa C. Kido Soule, Elizabeth B. Kujawinski (2016). Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP. International Society for Microbial Ecology, doi: 10.1038/ismej.2016.6.
  34. Altieri, K. E., S. E. Fawcett, A. J. Peters, D. M. Sigman, and M. G. Hastings (2016). Marine biogenic source of atmospheric organic nitrogen in the subtropical North Atlantic. Proceedings of the National Academy of Sciences, 113(4): 925-930.
  35. Sareen, N., Carlton, A. G., Surratt, J. D., Gold, A., Lee, B., Lopez-Hilfiker, F. D., Mohr, C., Thornton, J. A., Zhang, Z., Lim, Y. B., and Turpin, B. J. (2016). Identifying precursors and aqueous organic aerosol formation pathways during the SOAS campaign, Atmos. Chem. Phys., 16, 14409-14420, https://doi.org/10.5194/acp-16-14409-2016.
  36. Lim, Y. B. and Turpin, B. J.  (2015). Laboratory evidence of organic peroxide and peroxyhemiacetal formation in the aqueous phase and implications for aqueous OH, Atmos. Phys., 15, 12867-12877, doi:10.5194/acp-15-12867-2015.
  37. Melissa C. Kido Soule, Krista Longnecker, Winifred M. Johnson, Elizabeth B. Kujawinski (2015). Environmental metabolomics: Analytical strategies. Marine Chemistry, http://dx.doi.org/10.1016/j.marchem.2015.06.029
  38. Krista Longnecker, Joe Futrelle, Elizabeth Coburn, Melissa C. Kido Soule, Elizabeth B. Kujawinski (2015). Environmental metabolomics: Databases and tools for data analysis. Marine Chemistry, http://dx.doi.org/10.1016/j.marchem.2015.06.029
  39. Fiore, Cara L., Krista Longnecker, Melissa C. Kido Soule, Elizabeth B. Kujawinski (2015). Release of ecologically relevant metabolites by the cyanobacterium Synechococcus elongatus CCMP 1631. Environmental Microbiology, DOI: 10.1111/1462-2920.12899
  40. Krista Longnecker, Melissa C. Kido Soule, Elizabeth B. Kujawinski (2015). Dissolved organic matter produced by Thalassiosira pseudonana. Marine Chemistry, 168: 114-123.
  41. Durham, B. P., S. Sharma, H. Luo, C. B. Smith, S. A. Amin, S. J. Bender, S. P. Dearth, B. A. S. Van Mooy, S. R. Campagna, E. B. Kujawinski, E. V. Armbrust and M. A. Moran (2015). Cryptic carbon and sulfur cycling between surface ocean plankton. Proceedings of the National Academy of Sciences 112: 453-457.
  42. Longnecker, K. (2015). Dissolved organic matter in newly-formed sea ice and surface seawater. Geochimica et Cosmochimica Acta, 171: 39-49.
  43. Pedler Sherwood, B., E. A. Shaffer, K. Reyes, K. Longnecker, L. I. Aluwihare and F. Azam (2015). Metabolic characterization of a model bacterial strain capable of significant chemical alteration of marine dissolved organic matter, Marine Chemistry. DOI:10.1016/j.marchem.2015.06.027
  44. Liu Y., Kujawinski E.B. (2015). Chemical Composition and Potential Environmental Impacts of Water-Soluble Polar Crude Oil Components Inferred from ESI FT-ICR MS. PLoS ONE, 10(9): e0136376. doi:10.1371/journal.pone.0136376
  45. Dzepina, K., C. Mazzoleni, P. Fialho, S. China, B. Zhang, R.C. Owen, D. Helmig, J. Hueber, S. Kumar, J.A. Perlinger, L. Kramer, M.P. Dziobak, M.T. Ampadu, S. Olsen, D.J. Wuebbles, L.R. Mazzoleni (2015). Molecular Characterization of Free Tropospheric Aerosol Collected at the Pico Mountain Observatory: A Case Study with Long Range Transported Biomass Burning Plumes, Atmospheric Chemistry and Physics Discussions, 15:5047-5068.
  46. Griffith, D. R., M. C. Kido Soule, H. Matsufuji, T. I. Eglinton, E. B. Kujawinski and P. M. Gschwend (2014). Measuring free, conjugated, and halogenated estrogens in secondary treated wastewater effluent. Environmental Science & Technology 48: 2569-2578.
  47. White, H. K., S. L. Lyons, S. J. Harrison, D. M. Findley, Y. N. Liu and E. B. Kujawinski (2014). Long-term persistence of dispersants following the Deepwater Horizon oil spill. Environmental Science & Technology Letters 1: 295-299.
  48. Kane, E.S., L.R. Mazzoleni, C.J. Kratz, J.A. Hribljan, C.P. Johnson, T.G. Pypker, R.A. Chimmer (2014). Peat Porewater Dissolved Organic Carbon Concentration and Lability Increase with Warming: A Field Manipulation Experiment in a Poor-Fen, Biogeochemistry, 119: 161-178.
  49. Killberg-Thoreson, L., Sipler, R. E., Heil, C. A., Garrett, M. J., Roberts, Q. N. & Bronk, D. A. (2014). Nutrients released from decaying fish support microbial growth in the eastern Gulf of Mexico. Harmful Algae, 38:40-49.
  50. Sipler, R. E., McGuinness, L. R., Kirkpatrick, G. J., Kerkhof, L. J. & Schofield, O. M. (2014). Bacteriocidal effects of brevetoxin on natural microbial communities. Harmful Algae, 38:101-109.
  51. Arnold, W.A., K. Longnecker, K.D. Kroeger, E.B. Kujawinski (2014). Molecular signature of organic nitrogen in septic-impacted groundwater. Environmental Science: Processes & Impacts, 16:2400-2407.
  52. Zhao, Y., A.G. Hallar, L.R. Mazzoleni (2013). Atmospheric Organic Matter in Clouds: Exact Masses and Molecular Formula Identification using Ultrahigh Resolution FT-ICR Mass Spectrometry, Atmospheric Chemistry and Physics, 13, 12343-12362.

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