Select Publications
2025
Dimarchopoulou, D., J. Pineda, R. Ji, B. Worm, and Lotze H (2025). Historical versus recent trends in the tropicalization of fisheries catches along a latitudinal temperature gradient. MAR ECOL PROG SER 769:125- 145 https://doi.org/10.3354/meps14932
2024
Pineda J, Tepolt CK, Starczak V, Alatalo P, Shapiro S (2024) Concentration and condition of American lobster postlarvae in convergences. FISH OCEANOGR 33: 1-17. https://doi.org/10.1111/fog.1265 PDF
2023
Weinstock JB, Reyns N, Swiderski M, Flerchinger D, Pineda J (2023) Periodicity in Chthamalus fissus reproduction does not guarantee periodicity in settlement. MAR ECOL PROG SER 718:53-67. https://doi.org/10.3354/meps14386
2021
Yamhure G.M., Reyns N., and Pineda J. 2021. High larval concentrations and onshore transport of barnacle cyprids associated with thermal stratification. FRONTIERS IN MARINE SCIENCE 8:1569. https://doi.org/10.3389/fmars.2021.748389 PDF
2020
Pineda, J., Rouse, S., Starczak, V., Helfrich, K. and Wiley, D. (2020), Response of small sharks to nonlinear internal waves. Limnol Oceanogr, 65: 707-716. https://doi.org/10.1002/lno.11341. PDF
2019
Hagerty M, Reyns N, Pineda J, Govindarajan A (2019) Diversity and distribution of nearshore barnacle cyprids in Southern California through the 2015-16 El Niño PeerJ 7:e7186. PDF
2018
Hagerty ML, Reyns N, Pineda J (2018) Constrained nearshore larval distributions and thermal stratification. Mar Ecol Prog Ser 595:105-122. https://doi.org/10.3354/meps12561. PDF
Pineda, J., Reyns, N. and Lentz, S.J. (2018), Reduced barnacle larval abundance and settlement in response to large‐scale oceanic disturbances: Temporal patterns, nearshore thermal stratification, and potential mechanisms. Limnol Oceanogr, 63: 2618-2629. https://doi.org/10.1002/lno.10964. PDF
Pineda, J. and Reyns, N., Larval transport in the coastal zone: biological and physical processes. In. Evolutionary Ecology of Marine Invertebrate Larvae. Edited by Tyler J. Carrier, Adam M. Reitzel, and Andreas Heyland: Oxford University Press (2018). © Oxford University Press. DOI: 10.1093/oso/9780198786962.003.0011. PDF
2016
Lentz SJ, JH Churchill, KA Davis, JT Farrar, J Pineda, V Starczak (2016). The characteristics and dynamics of wave-driven flow across a platform coral reef in the Red Sea. J. Geoph. Res. Oceans., 121:1360-1376.
Pineda et al. (2016), A crab swarm at an ecological hotspot: patchiness and population density from AUV observations at a coastal, tropical seamount. PeerJ 4:e1770; DOI 10.7717/peerj.1770. PDF
2015
Govindarajan et al. (2015), Phylogeographic structure and northward range expansion in the barnacleChthamalus fragilis.PeerJ 3:e926;DOI 10.7717/peerj.926. PDF
Annette F. Govindarajan, Jesús Pineda, Mike Purcell, John A. Breier, Species- and stage-specific barnacle larval distributions obtained from AUV sampling and genetic analysis in Buzzards Bay, Massachusetts, USA, Journal of Experimental Marine Biology and Ecology,
Volume 472, 2015, Pages 158-165, ISSN 0022-0981, https://doi.org/10.1016/j.jembe.2015.07.012. PDF
Mazzuco, A.C.A., Christofoletti, R.A., Pineda, J. et al. Temporal variation in intertidal community recruitment and its relationships to physical forcings, chlorophyll-a concentration and sea surface temperature. Mar Biol 162, 1705–1725 (2015). https://doi.org/10.1007/s00227-015-2689-6. PDF
Pineda, J., V. Starczak, J. C. B. da Silva,K. Helfrich, M. Thompson, and D. Wiley(2015), Whales and waves: Humpbackwhale foraging response and theshoaling of internal waves atStellwagen Bank,J. Geophys. Res.Oceans,120, doi:10.1002/2014JC010564. PDF
2013
Gyory, Joanna & Pineda, Jesús & Solow, Andrew. (2013). Turbidity triggers larval release by the intertidal barnacle Semibalanus balanoides. Marine Ecology Progress Series. 476. 141-151. 10.3354/meps10186. PDF
, , , , , , , , (2013), Two spatial scales in a bleaching event: Corals from the mildest and the most extreme thermal environments escape mortality, Limnology and Oceanography, 58, doi: 10.4319/lo.2013.58.5.1531. PDF
2011
Blythe J, Da Silva JCB, Pineda J (2011) Nearshore, seasonally persistent fronts in sea surface temperature on Red Sea tropical reefs. ICES J Mar Sci 68:1827-1832. PDF
Davis K, Lentz S, Pineda J, Farrar J, Starczak V, Churchill J (2011) Observations of the thermal environment on Red Sea platform reefs: a heat budget analysis. Coral Reefs 30:25-36. PDF
DiBacco C, Fuchs H, Pineda J, Helfrich K (2011) Swimming behavior and velocities of barnacle cyprids in a downwelling flume. Mar Ecol Prog Ser 433:131-148. PDF
Gyory J, Pineda J (2011) High-frequency observations of early-stage larval abundance: Do winter storms trigger synchronous larval release in Semibalanus balanoides? Marine Biology 158:1581–1589. PDF
Magalhaes JM, Araújo IB, Da Silva JCB, Grimshaw R, Davis K, Pineda J (2011) Atmospheric gravity waves in the Red Sea: a new hot-spot. Nonlin Proc Geophys 18:71-79. PDF
Starczak VR, Pérez-Brunius P, Levine HE, Gyory J, Pineda J (2011) The role of season and salinity in influencing barnacle distribution in two adjacent coastal mangrove lagoons. Bull Mar Sci 87:275-299. PDF
2010
JPineda J, Porri F, Starczak VR, Blythe J (2010) Causes of decoupling between larval supply and settlement and consequences for understanding recruitment and population connectivity. J Exp Mar Biol Ecol 392:9-21, https://doi.org/10.1016/j.jembe.2010.04.008. PDF
Tapia, F., DiBacco, C., Jarrett, J.N., Pineda, J. (2010). Vertical distribution of barnacle larvae at a fixed nearshore station in southern California : stage-specific and diel patterns. Estuar. Coast. Shelf Sci. 86, 265-270. PDF
2009
Blythe, JN & Pineda, Jesús. (2009). Habitat selection at settlement endures in recruitment time-series. Marine Ecology Progress Series. 396. 77-84. 10.3354/meps08309. PDF
Pineda, J., Reyns, N.B. and Starczak, V.R. (2009), Complexity and simplification in understanding recruitment in benthic populations. Popul Ecol, 51: 17-32. https://doi.org/10.1007/s10144-008-0118-0 PDF
2008
Scotti A, Beardsley RC, Butman B, Pineda J (2008) Shoaling of nonlinear internal waves in Massachusetts Bay. J Geophys Res 113:18. PDF
2007
Cowen, R.K., G. Gawarkiewicz, J. Pineda, S.R. Thorrold, and F.E. Werner. 2007. Population connectivity in marine systems: an overview. Oceanography 20:14-21. PDF
Pérez-Brunius, P., M. López, A. Pares-Sierra, and J. Pineda. 2007. Comparison of upwelling indices off Baja California derived from three different wind data sources. CalCOFI Reports 48:204-214. PDF
Pineda J, Hare JA, Sponaugle S (2007) Larval dispersal and transport in the coastal ocean and consequences for population connectivity. Oceanography 20:22-39. PDF
Scotti, A. and J. Pineda (2007). Plankton accumulation and transport in propagating nonlinear internal fronts. Journal of Marine Research 65: 117-145. PDF
Tapia, F. J., & Pineda, J. (2007). Stage-specific distribution of barnacle larvae in nearshore waters: potential for limited dispersal and high mortality rates. Marine Ecology Progress Series, 342, 177-190. PDF
2006
Pérez-Brunius, P, M. Lopez M, and J. Pineda (2006) Hydrographic conditions near the coast of northwestern Baja California: 1997 to 2004. Continental Shelf Research 26:885-901. PDF
Pineda, J., Starczak, V., & Stueckle, T. A. (2006). Timing of successful settlement: demonstration of a recruitment window in the barnacle Semibalanus balanoides. Marine Ecology Progress Series, 320, 233-237. PDF
2005
Ladah, L., F. Tapia F, J. Pineda, and M. Lopez (2005) Spatially heterogeneous, synchronous settlement of Chthamalus spp. larvae in northern Baja California. Marine Ecology Progress Series 302:177-185. PDF
Pineda, J., DiBacco, C., & Starczak, V. (2005). Barnacle larvae in ice: survival, reproduction, and time to postsettlement metamorphosis. Limnology and Oceanography, 50(5), 1520-1528. PDF
2004
Scotti, A., & Pineda, J. (2004). Observation of very large and steep internal waves of elevation near the Massachusetts coast. Geophysical research letters, 31(22). PDF
Tapia, F., J. Pineda, F. Ocampo-Torres, H. Fuchs, E. Parnell, P. Montero and S. Ramos (2004). High-frequency observations of wind-forced onshore transport at a coastal site in Baja California. Continental Shelf Research 24, 1573-1585. PDF
2003
Harding, K. C., T. Härkönen, and J. Pineda. 2003. Estimating quasi extinction risk of European harbour seals: reply to Lonergan & Harwood. Ecology Letters 6:894-897. PDF
Helfrich, K. and J. Pineda. (2003). Accumulation of particles in propagating fronts. Limnology and Oceanography 48: 1509-1520. PDF
2002
Kingsford, M. J., J. Leis, A. L. Shanks, K. Lindeman, S. Morgan, and J. Pineda. 2002. Sensory environments, larval abilities and local self-recruitment. Bulletin of Marine Science 49:309-340. PDF
Pineda, J., & López, M. (2002). Temperature, stratification and barnacle larval settlement in two Californian sites. Continental Shelf Research, 22(8), 1183-1198. PDF
Pineda J, Riebensahm D, Medeiros-Bergen D (2002) Semibalanus balanoides in winter and spring: larval concentration, settlement, and substrate occupancy. Marine Biology (Berl) 140:789-800. PDF
Sponaugle, S., R. K. Cowen, A. L. Shanks, S. G. Morgan, J. Leis, J. Pineda, G. Boehlert, M. J. Kingsford, K. Lindeman, C. Grimes, and J. L. Munro. 2002. Predicting self-recruitment in marine populations: Biophysical correlates and mechanisms. Bulletin of Marine Science 49:341-375. PDF
2001
Levin, L.A., R.J. Etter, M.A. Rex, A.J. Gooday, C.R. Smith, J. Pineda, C.T. Stuart, R.R. Hessler, and D. Pawson (2001). Environmental influences on regional deep-sea species diversity. Annual Review of Ecology and Systematics 32:51-93. PDF
Souza, A. and J. Pineda. 2001. Tidal mixing modulation of sea surface temperature and diatom abundance in Southern California. Continental Shelf Research 21: 651-666. PDF
2000
Pineda, J. (2000). Linking larval settlement to larval transport: assumptions, potentials, and pitfalls. Oceanography of the eastern Pacific, 1(2000), 84-105. PDF