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Articles published in peer-reviewed journals

As an academic scientist, I supervise graduate students and post-doctoral fellows and encourage them to actively publish their work. In the following list, student/postdoc first-authorship is indicated by *.

[83]
J. Bonnel, S. Dosso, W. Hodgkiss, M. Ballard, D. Garcia, K. Lee, A. McNeese, and P. Wilson. Trans-dimensional inversion for seafloor properties for three mud depocenters on the new england shelf under dynamical oceanographic conditions. The Journal of the Acoustical Society of America, 155(3):1825–1839, 2024.
[82]
P. Dahl, J. Bonnel, and D. Dall'Osto. On the equivalence of scalar-pressure and vector-based acoustic dosage measures as derived from time-limited signal waveforms. The Journal of the Acoustical Society of America, in press, 2024.
[81]
*M. Gigot, R. Tremblay, J. Bonnel, D. Mathias, T. Meziane, L. Chauvaud, and F. Olivier. Noise pollution causes parental stress on marine invertebrates, the Giant scallop example. Marine Pollution Bulletin, in press, 2024.
[80]
*A. Vardi and J. Bonnel. End-to-end geoacoustic inversion with neural networks in shallow water using a single hydrophone. IEEE Journal of Oceanic Engineering, 49(2):380–389, 2024.
[79]
J. Bonnel, A. McNeese, P. Wilson, and S. Dosso. Geoacoustic inversion using simple hand-deployable acoustic systems. IEEE Journal of Oceanic Engineering, 48(2):592–603, 2023.
[78]
S. Dosso and J. Bonnel. Joint trans-dimensional inversion for water-column sound speed and seabed geoacoustic models. JASA Express Letters, 3(6):060801, 2023.
[77]
J. Flamant and J. Bonnel. Broadband properties of potential and kinetic energies in an oceanic waveguide. The Journal of the Acoustical Society of America, 153(5):3012–3012, 2023.
[76]
*M. Gigot, F. Olivier, G. Cervello, R. Tremblay, D. Mathias, T. Meziane, L. Chauvaud, and J. Bonnel. Pile driving and drilling underwater sounds impact the metamorphosis dynamics of Pecten maximus (L., 1758) larvae. Marine Pollution Bulletin, 191:114969, 2023.
[75]
*M. Gigot, R. Tremblay, J. Bonnel, L. Chauvaud, and F. Olivier. Physiological condition of the warty venus (venus verrucosa l. 1758) larvae modulates response to pile driving and drilling underwater sounds. Frontiers in Marine Science, 10:1117431, 2023.
[74]
*M. Goldwater, D. Zitterbart, D. Wright, and J. Bonnel. Machine-learning-based simultaneous detection and ranging of impulsive baleen whale vocalizations using a single hydrophone. The Journal of the Acoustical Society of America, 153(2):1094–1107, 2023.
[73]
*Y. Jézéquel, D. Mathias, F. Olivier, E. Amice, S. Chauvaud, A. Jolivet, J. Bonnel, M. Sejr, and L. Chauvaud. Passive acoustics suggest two different feeding mechanisms in the Atlantic walrus (Odobenus rosmarus rosmarus). Polar Biology short note, 45(6):1157–1162, 2023.
[72]
F. Olivier, M. Gigot, D. Mathias, Y. Jezequel, T. Meziane, C. L'Her, L. Chauvaud, and J. Bonnel. Assessing the impacts of anthropogenic sounds on early stages of benthic invertebrates: the larvosonic system. Limnology and Oceanography: Methods, 21(2):53–68, 2023.
[71]
*G. Richard, D. Mathias, J. Collin, L. Chauvaud, and J. Bonnel. Three-dimensional anthropogenic underwater noise modeling in an arctic fjord for acoustic risk assessment. Marine Pollution Bulletin, 187:114487, 2023.
[70]
*A. Varon, J. Mars, and J. Bonnel. Approximation of modal wavenumbers and group speeds in an oceanic waveguide using a neural network. JASA Express Letters, 3(6):066003, 2023.
[69]
P. Dahl and J. Bonnel. Vector acoustic and polarization properties of underwater ship noise. The Journal of the Acoustical Society of America, 151(6):3818–3827, 2022.
[68]
S. Dosso and J. Bonnel. Hybrid seabed parameterization to investigate geoacoustic gradients at the new england mud patch. IEEE Journal of Oceanic Engineering, 47(3):620–634, 2022.
[67]
*Y. Jézéquel, N. Aoki, A. Mooney, and J. Bonnel. Tank acoustics substantially distort broadband sounds produced by marine crustaceans. The Journal of the Acoustical Society of America, 152(6):3747–3755, 2022.
[66]
*Y. Jézéquel, J. Bonnel, P. Eliès, and L. Chauvaud. Acoustic scaling in the european spiny lobster (palinurus elephas). The Journal of the Acoustical Society of America, 152(6):3235–3244, 2022.
[65]
D. Knobles, T. Neilsen, P. Wilson, W. Hodgkiss, J. Bonnel, and YT. Lin. Maximum entropy inference of seabed properties using waveguide invariant features from surface ships. The Journal of the Acoustical Society of America, 151(5):2885–2896, 2022.
[64]
*G. Richard, J. Bonnel, J. Beesau, E. Calvo, F. Cassiano, M. Dramet, A. Glaziou, K. Korycka, C. Guinet, and F. Samaran. Passive acoustic monitoring reveals feeding attempts at close range from soaking demersal longlines by two killer whale ecotypes. Marine Mammal Science, 38(1):304–325, 2022.
[63]
D. Zitterbart, A. Bocconcelli, M. Ochs, and J. Bonnel. Tossit: A low-cost, hand deployable, rope-less and acoustically silent mooring for underwater passive acoustic monitoring. HardwareX, page e00304, 2022.
[62]
A. Bates, R. Primack, PAN-Environment Working Group, and C. Duarte. Global COVID-19 lockdown highlights humans as both threats and custodians of the environment. Biological Conservation, page 109175, 2021. [the PAN-Environment Working Group gathers 348 authors, including a team led by J. Bonnel].
[61]
J. Bonnel, S. Dosso, J. Goff, Y.T. Lin, J. Miller, G. Potty, P. Wilson, and D. Knobles. Trans-dimensional geoacoustic inversion using prior information on range-dependent seabed layering. IEEE Journal of Oceanic Engineering, 47(3):594–606, 2021.
[60]
J. Bonnel, S. Dosso, D. Knobles, and S. Wilson. Trans-dimensional inversion on the New England Mudpatch using high-order modes. IEEE Journal of Oceanic Engineering, 47(3):607–619, 2021.
[59]
J. Bonnel, J. Flamant, D. Dall'Osto, N. Le Bihan, and P. Dahl. Polarization of ocean acoustic normal modes. The Journal of the Acoustical Society of America, 150(3):1897–1911, 2021.
[58]
J. Bonnel, B. Kinda, and D. Zitterbart. Low-frequency ocean ambient noise on the Chukchi Shelf in the changing Arctic. The Journal of the Acoustical Society of America, 149(6):4061–4072, 2021.
[57]
*M. Goldwater, J. Bonnel, A. Cammareri, D. Wright, and D. Zitterbart. Classification of dispersive gunshot calls using a convolutional neural network. JASA Express Letters, 1(10):106002, 2021.
[56]
*Y. Jézéquel, J. Bonnel, and L. Chauvaud. Potential for acoustic masking due to shipping noise in the European lobster (Homarus gammarus). Marine Pollution Bulletin, 173:112934, 2021.
[55]
*Y. Jézéquel, I. Jones, J. Bonnel, L. Chauvaud, J. Atema, and A. Mooney. Sound detection by the American lobster (Homarus americanus). Journal of Experimental Biology, 224(6), 2021.
[54]
Y-M. Jiang, S. Dosso, J Bonnel, P. Wilson, and D. Knobles. Passive acoustic glider for seabed characterization at the New England Mud Patch. IEEE Journal of Oceanic Engineering, 47(3):541–552, 2021.
[53]
*T. Paviet-Salomon, J. Bonnel, C. Dorffer, B. Nicolas, T. Chonavel, D. Tollefsen, D. Knobles, P. Wilson, and A. Dremeau. Estimation of frequency-wavenumber diagrams using a physics-based grid-free compressed sensing method. IEEE Journal of Oceanic Engineering, 47(3):565–577, 2021.
[52]
*G. Richard, F. Samaran, G. Guinet, and J. Bonnel. Settings of demersal longlines reveal acoustic cues that can inform toothed whales where and when to depredate. JASA Express Letters, 1(1):016004, 2021.
[51]
D. Tollefsen, W. Hodgkiss, S. Dosso, J. Bonnel, and D. Knobles. Probabilistic estimation of merchant ship source levels in an uncertain shallow-water environment. IEEE Journal of Oceanic Engineering, 47(3):647–656, 2021.
[50]
J. Bonnel, A. Thode, D. Wright, and R. Chapman. Nonlinear time-warping made simple: A step-by-step tutorial on underwater acoustic modal separation with a single hydrophone. The Journal of the Acoustical Society of America, 147(3):1897–1926, 2020. [tutorial article featured on JASA cover].
[49]
*Y. Jézéquel, L Chauvaud, and J. Bonnel. Spiny lobster sounds can be detectable over kilometres underwater. Scientific reports, 10(1):1–11, 2020.
[48]
*Y. Jézéquel, J. Coston-Guarini, L. Chauvaud, and J. Bonnel. Acoustic behaviour of male European lobsters (Homarus gammarus) during agonistic encounters. Journal of Experimental Biology, 223(4), 2020.
[47]
*G. Richard, J. Bonnel, J. Tixier, P.and Arnould, A. Janc, and C. Guinet. Evidence of deep-sea interactions between toothed whales and longlines. Ambio, 49(1):173–186, 2020.
[46]
J. Bonnel, S. Dosso, D. Eleftherakis, and R. Chapman. Trans-dimensional inversion of modal dispersion data on the New England Mud Patch. IEEE Journal of Oceanic Engineering, 45(1):116–130, 2019.
[45]
J. Bonnel, S. Pecknold, P. Hines, and R. Chapman. An experimental benchmark for geoacoustic inversion methods. IEEE Journal of Oceanic Engineering, 46(1):261–282, 2019.
[44]
*R. Emmetière, J. Bonnel, X. Cristol, M. Gehant, and T. Chonavel. Passive source depth discrimination in deep-water. IEEE Journal of Selected Topics in Signal Processing, 13(1):185–197, 2019.
[43]
*Y. Jézéquel, J. Bonnel, J. Coston-Guarini, and L. Chauvaud. Revisiting the bioacoustics of European spiny lobsters Palinurus elephas: comparison of antennal rasps in tanks and in situ. Marine Ecology Progress Series, 615:143–157, 2019.
[42]
Y.-T. Lin, J. Bonnel, D. Knobles, and P. Wilson. Broadband waveform geoacoustic inversions with absolute travel time. IEEE Journal of Oceanic Engineering, 45(1):174–188, 2019.
[41]
T. Van Baarsel, P. Roux, J. Mars, J. Bonnel, M. Arrigoni, S. Kerampran, and B. Nicolas. Dynamic imaging of a capillary-gravity wave in shallow water using amplitude variations of eigenbeams. The Journal of the Acoustical Society of America, 146(4):3353–3361, 2019.
[40]
J. Bonnel, Y.T. Lin, D. Eleftherakis, J. Goff, S. Dosso, R. Chapman, J. Miller, and G. Potty. Geoacoustic inversion on the New England Mud Patch using warping and dispersion curves of high-order modes. The Journal of the Acoustical Society of America, 143(5):EL405–EL411, 2018. [This article is one of the 20 articles chosen by ASA in 2020 to "represent some of the most recently published, highly-cited research from JASA"].
[39]
*D. Cazau, J. Bonnel, and M. Baumgartner. Wind speed estimation using acoustic underwater glider in a near-shore marine environment. IEEE Transactions on Geoscience and Remote Sensing, 57(4):2097–2106, 2018.
[38]
*R. Emmetière, J. Bonnel, M. Géhant, X. Cristol, and T. Chonavel. Understanding deep-water striation patterns and predicting the waveguide invariant as a distribution depending on range and depth. The Journal of the Acoustical Society of America, 143(6):3444–3454, 2018.
[37]
*Y. Jézéquel, J. Bonnel, J. Coston-Guarini, and L. Guarini, J-M.and Chauvaud. Sound characterization of the European lobster Homarus gammarus in tanks. Aquatic Biology, 27:13–23, 2018. [Feature article].
[36]
*E. Leroy, J. Royer, J. Bonnel, and F. Samaran. Long-term and seasonal changes of large whale call frequency in the southern Indian Ocean. Journal of Geophysical Research: Oceans, 123(11):8568–8580, 2018. [Article among the top 10% most downloaded JGR Ocean papers in the 12 months following publication].
[35]
*E. Leroy, F. Samaran, K. Stafford, J. Bonnel, and JY. Royer. Broad-scale study of the seasonal and geographic occurrence of blue and fin whales in the Southern Indian Ocean. Endangered Species Research, 37:289–300, 2018.
[34]
J. Bonnel, S. Caporale, and A. Thode. Waveguide mode amplitude estimation using warping and phase compensation. The Journal of the Acoustical Society of America, 141:2243–2255, 2017.
[33]
*D. Cazau, J. Bonnel, J. Jouma'a, Y. le Bras, and C. Guinet. Measuring the marine soundscape of the Indian Ocean with southern elephant seals used as acoustic gliders of opportunity. Journal of Atmospheric and Oceanic Technology, 34(1):207–223, 2017.
[32]
*D. Cazau, C. Pradalier, J. Bonnel, and C. Guinet. Do southern elephant seals behave like weather buoys? Oceanography, 30(2):140–149, 2017.
[31]
*E. Conan, J. Bonnel, B. Nicolas, and T. Chonavel. Using the trapped energy ratio for source depth discrimination with a horizontal line array: Theory and experimental results. The Journal of the Acoustical Society of America, 145(2):2776–2786, 2017.
[30]
*L. Day, J. Jouma'a, J. Bonnel, and C. Guinet. Acoustic measurements of post-dive cardiac responses in southern elephant seals (Mirounga leonina) during surfacing at sea. Journal of Experimental Biology, pages jeb–146928, 2017.
[29]
A. Dremeau, F. Le Courtois, and J. Bonnel. Reconstruction of dispersion curves in the frequency-wavenumber domain using compressed sensing on a random array. IEEE Journal of Oceanic Engineering, 42(4):914–922, 2017.
[28]
*Y. Le Gall, FX. Socheleau, and J. Bonnel. Performance analysis of single-receiver matched-mode localization. IEEE Journal of Oceanic Engineering, 44(1):193–206, 2017.
[27]
*E. Leroy, F. Samaran, J. Bonnel, and JY Royer. Identification of two potential whale calls in the southern Indian Ocean, and their geographic and seasonal occurrence. The Journal of the Acoustical Society of America, 142(3):1413–1427, 2017.
[26]
*G. Richard, C. Guinet, J. Bonnel, N. Gasco, and P. Tixier. Do commercial fisheries display optimal foraging? The case of longline fishers in competition with odontocetes. Canadian Journal of Fisheries and Aquatic Sciences, ja, 2017.
[25]
A. Thode, J. Bonnel, M. Thieury, A. Fagan, C. Verlinden, D. Wright, C. Berchok, and J. Crance. Using nonlinear time warping to estimate North Pacific right whale calling depths in the Bering Sea. The Journal of the Acoustical Society of America, 141(5):3059–3069, 2017.
[24]
*E. Conan, J. Bonnel, T. Chonavel, and B. Nicolas. Source depth discrimination with a vertical line array. The Journal of the Acoustical Society of America, 140(5):EL434–EL440, 2016.
[23]
*Y. Le Gall, S. Dosso, FX. Socheleau, and J. Bonnel. Bayesian source localization with uncertain Green's function in an uncertain shallow water ocean. The Journal of the Acoustical Society of America, 139(3):993–1004, 2016.
[22]
*Y. Le Gall, FX. Socheleau, and J. Bonnel. Matched-field performance prediction with model mismatch. IEEE Signal Processing Letters, 23(4):409–413, 2016.
[21]
*E. Leroy, F. Samaran, J. Bonnel, and J.Y. Royer. Seasonal and diel vocalization patterns of Antarctic blue whale (Balaenoptera musculus intermedia) in the Southern Indian Ocean: a multi-year and multi-site study. PLOS ONE, 11(11):e0163587, 2016.
[20]
J. Crance, C. Berchok, . Bonnel, and A. Thode. Northeasternmost record of a North Pacific fin whale (Balaenoptera physalus) in the Alaskan Chukchi Sea. Polar Biology, pages 1–7, 2015.
[19]
*B.G. Kinda and J Bonnel. Passive acoustic observations of tide height in the iroise sea using ambient noise. The Journal of the Acoustical Society of America, 138(3):EL299–EL304, 2015.
[18]
*F. Le Courtois and J. Bonnel. Compressed sensing for wideband wavenumber tracking in dispersive shallow water. The Journal of the Acoustical Society of America, 138(2):575–583, 2015.
[17]
FX. Socheleau, E. Leroy, A. Carvallo Pecci, F. Samaran, J. Bonnel, and JY. Royer. Automated detection of antarctic blue whale calls. The Journal of the Acoustical Society of America, 138(5):3105–3117, 2015.
[16]
F. Sturm and J. Bonnel. Time-frequency features of three-dimensional sound propagation in wedge-shaped oceanic waveguides. IEEE Journal of Oceanic Engineering, 41(3):731–739, 2015.
[15]
J. Bonnel, A. Thode, S. Blackwell, K. Kim, and M. Macrander. Range estimation of bowhead whale (Balaena mysticetus) calls in the Arctic using a single hydrophone. The Journal of the Acoustical Society of America, 136(1):145–155, 2014.
[14]
*F. Le Courtois and J. Bonnel. Autoregressive model for high-resolution wavenumber estimation in a shallow water environment using a broadband source. The Journal of the Acoustical Society of America, 135(4):EL199–EL205, 2014.
[13]
*Y. Le Gall, FX. Socheleau, and J. Bonnel. Matched-field processing performance under the stochastic and deterministic signal models. IEEE Transactions on Signal Processing, 62(22):5825–5838, 2014.
[12]
J. Bonnel, S. Dosso, and R. Chapman. Bayesian geoacoustic inversion of single hydrophone light bulb data using warping dispersion analysis. The Journal of the Acoustical Society of America, 134(1):120–130, 2013.
[11]
J. Bonnel, G. Le Touze, B. Nicolas, and J. Mars. Physics-based time-frequency representations for underwater acoustics: Power class utilization with waveguide-invariant approximation. IEEE Signal Processing Magazine, 30(6):120–129, 2013.
[10]
*O. Le Bot, C. Gervaise, J. Bonnel, and J. Mars. Désentrelacement de clics par analyse du rythme. Traitement du signal, 30:196–218, 2013.
[9]
*Y. Le Gall and J. Bonnel. Debruitage et separation dans le plan temps-frequence des contributions sonores de navires en mouvement. Traitement du signal, 30(3-4-5):149–168, 2013.
[8]
*Y. Le Gall and J. Bonnel. Passive estimation of the waveguide invariant per pair of modes. The Journal of the Acoustical Society of America, 134(2):EL230–EL236, 2013.
[7]
J. Zeng, R. Chapman, and J. Bonnel. Inversion of seabed attenuation using time-warping of close range data. The Journal of the Acoustical Society of America, 134(5):EL394–EL399, 2013.
[6]
J. Bonnel, C. Gervaise, B. Nicolas, and J. Mars. Single-receiver geoacoustic inversion using modal reversal. The Journal of the Acoustical Society of America, 131(1):119–128, 2012.
[5]
C. Gervaise, BG Kinda, J. Bonnel, Y. Stéphan, and S. Vallez. Passive geoacoustic inversion with a single hydrophone using broadband ship noise. The Journal of the Acoustical Society of America, 131(3):1999–2010, 2012.
[4]
J. Bonnel and N.R. Chapman. Geoacoustic inversion in a dispersive waveguide using warping operators. The Journal of the Acoustical Society of America, 130(2):EL101–EL107, 2011.
[3]
J. Bonnel, C. Gervaise, P. Roux, B. Nicolas, and J. Mars. Modal depth function estimation using time-frequency analysis. The Journal of the Acoustical Society of America, 130(1):61–71, 2011.
[2]
J. Bonnel, B. Nicolas, J. Mars, and S. Walker. Estimation of modal group velocities with a single receiver for geoacoustic inversion in shallow water. The Journal of the Acoustical Society of America, 128:719–727, 2010.
[1]
J. Bonnel, A. Khademi, S. Krishnan, and C. Ioana. Small bowel image classification using cross-co-occurrence matrices on wavelet domain. Biomedical Signal Processing and Control, 4(1):7–15, 2009.