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Publications

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Refereed Publications

*Indicates student or postdoctoral advisee

  1. Robinson, A.R., McGillicuddy, D.J.,Calman, J., Ducklow, H.W., Fasham, M.J.R., Hoge, F.E., Leslie, W.G., McCarthy, J.J., Podewski, S., Porter, D.L., Saure, G., and J.A. Yoder, 1993.  Mesoscale and upper ocean variabilities during the 1989 JGOFS bloom study.  Deep-Sea Research, 40(1), 9-35.
  2. McGillicuddy, D.J., 1995.  One dimensional numerical simulation of new primary production: Lagrangian and Eulerian formulations.  Journal of Plankton Research, 17(2), 405-412.
  3. McGillicuddy, D.J., McCarthy, J.J., and A.R. Robinson, 1995a.  Coupled physical and biological modeling of the spring bloom in the North Atlantic: I. Model formulation and one dimensional bloom processes.   Deep-Sea Research, 42(8), 1313-1357.
  4. McGillicuddy, D.J., Robinson, A.R., and J.J. McCarthy, 1995b.  Coupled physical and biological modeling of the spring bloom in the North Atlantic: II. Three dimensional bloom and post-bloom processes.   Deep-Sea Research, 42(8), 1359-1398.
  5. Muller-Karger, F., Richardson, P.L., and D.J. McGillicuddy, 1995.  On the offshore dispersal of the Amazon's Plume in the North Atlantic.   Deep-Sea Research, 42(11/12), 2127-2137.
  6. McGillicuddy, D.J. and A.R. Robinson, 1997a.  Eddy induced nutrient supply and new production in the Sargasso Sea.  Deep Sea Research, 44(8), 1427-1450.
  7. McGillicuddy, D.J.and A.R. Robinson, 1997b.  Interaction between the oceanic mesoscale and the surface mixed layer.  Dynamics of Atmospheres and Oceans, 27, 549-574.
  8. Lynch, D.R., Gentleman, W.C., McGillicuddy, D.J., and C.S. Davis, 1998. Biological/physical simulations of Calanus finmarchicus population dynamics in the Gulf of Maine. Marine Ecology Progress Series, 169, 189-210.
  9. McGillicuddy, D.J.,Robinson, A.R., Siegel, D.A., Jannasch, H.W., Johnson, R., Dickey, T.D., McNeil, J., Michaels, A.F., and A.H. Knap, 1998a.  Influence of mesoscale eddies on new production in the Sargasso Sea.  Nature, 394, 263-265.
  10. McGillicuddy, D.J., Lynch, D.R., Moore, A.M., Gentleman, W.C., Davis, C.S., and C.J. Meise, 1998b.  An adjoint data assimilation approach to diagnosis of physical and biological controls on Pseudocalanus spp. in the Gulf of Maine - Georges Bank region.  Fisheries Oceanography, 7(3/4), 205-218
  11. Haidvogel, D.B, Malanotte-Rizzoli, P. and D.J. McGillicuddy, eds., 1999. Theory and Modeling of Ocean Circulation, Data Assimilation and Interdisciplinary Applications: A Tribute to Professor Allan R. Robinson. Dynamics of Atmospheres and Oceans 29(2-4), 469pp.
  12. McGillicuddy, D.J., Johnson, R.J., Siegel, D.A., Michaels, A.F., Bates, N.R., and A.H. Knap, 1999. Mesoscale variations of biogeochemical properties in the Sargasso Sea.  Journal of Geophysical Research, 104(C6), 13,381-13,394.
  13. McNeil, J.D., Jannasch, H.W., Dickey, T.D., McGillicuddy, D.J., Brzezinski, M. and C.M. Sakamoto, 1999.  New chemical, bio-optical and physical observations of upper ocean response to the passage of a mesoscale eddy off Bermuda.  Journal of Geophysical Research, 104(C7), 15,537-15,548.
  14. Siegel, D.A., McGillicuddy, D.J.and E.A. Fields, 1999.  Mesoscale eddies, satellite altimetry and new production in the Sargasso Sea.  Journal of Geophysical Research, 104(C6), 13,359-13,379.
  15. Walstad, L.J. and D.J. McGillicuddy, 2000.  Data assimilation for coastal observing systems.  Oceanography,13(1), 47-53.
  16. Bucklin, A., Guarnieri, M., McGillicuddy, D.J.and R.S. Hill, 2001. Spring-summer evolution of Pseudocalanus spp. abundance on Georges Bank based on molecular discrimination of P. moultoni and P. newmani.  Deep-Sea Research II, 48, 589-608.
  17. Garcon, V.C., Oschlies, A., Doney, S.C., McGillicuddy, D.J.and J. Waniek, 2001.  The role of mesoscale variability on plankton dynamics in the North Atlantic.   Deep-Sea Research II, 48, 2199-2226.
  18. Lynch, D.R. and D.J. McGillicuddy, 2001.  Objective analysis for coastal regimes.   Continental Shelf Research, 21, 1299-1315.
  19. Marine Zooplankton Colloquium 2 (G.A. Paffenhöfer and 41 others), 2001. Future marine zooplankton research - a perspective.   Marine Ecology Progress Series, 222, 297-308.
  20. McGillicuddy, D.J. and V.K. Kosnyrev, 2001.  Dynamical Interpolation of Mesoscale Flows in the Topex/Poseidon Diamond Surrounding the U.S. JGOFS Bermuda Atlantic Time-series Site.  Journal of Geophysical Research, 106(C8), 16,641-16,656.
  21. McGillicuddy, D.J., Kosnyrev, V.K., Ryan, J.P. and J.A. Yoder, 2001a. Covariation of mesoscale ocean color and sea surface temperature patterns in the Sargasso Sea.   Deep-Sea Research II, 48, 1823-1836.
  22. McGillicuddy, D.J., Lynch, D.R., Wiebe, P., Runge, J., Durbin, E.G., Gentleman, W.C., and C.S. Davis, 2001b.  Evaluating the synopticity of the U.S. Globec Georges Bank Broad-scale sampling pattern with Observational System Simulation Experiments.  Deep-Sea Research II, 48, 483-499.
  23. Lynch, D.R, Naimie, C.E., Ip, J.T., Lewis, C.V., Werner, F.E., Luettich, R., Blanton, B.O., Quinlan, J., McGillicuddy, D.J.,Ledwell, J.R., Churchill, J., Kosnyrev, V.K., Davis, C.S., Gallager, S.M., Ashjian, C.J., Lough, R.G., Manning, J., Flagg, C.N., Hannah, C.G. and R.C. Groman, 2001.  Real-time data assimilative modeling on Georges Bank. Oceanography, 14(1), 65-77.
  24. McGillicuddy, D.J., 2001a. Models of small-scale patchiness.  In: Encyclopedia of Ocean Science, J.H. Steele, K.K. Turekian, and S.A. Thorpe, eds. Academic Press, London, 2820-2833.
  25. McGillicuddy, D.J., 2001b. The internal weather of the sea and its influences on ocean biogeochemistry.  Oceanography, 14(4), 78-92.
  26. Flierl, G.R. and D.J. McGillicuddy, 2002.  Mesoscale and submesoscale physical-biological interactions.   In:  Biological-Physical Interactions in the Sea, A.R. Robinson, J.J. McCarthy and B.J. Rothschild, eds. The Sea, Volume 12.  John Wiley and Sons, Inc., New York, 113-185.
  27. Hetland, R.D., McGillicuddy, D.J.and R.P. Signell, 2002.  Cross-frontal entrainment of plankton into a buoyant plume: the frog tongue mechanism.   Journal of Marine Research, 60, 763-777.
  28. McGillicuddy, D.J.and A. Bucklin, 2002.  Intermingling of two Pseudocalanus species on Georges Bank.  Journal of Marine Research, 60, 583-604.
  29. Goldman, J.C. and D.J. McGillicuddy,2003. Effect of large marine diatoms growing at low light on episodic new production.  Limnology and Oceanography, 48, 1176-1182.
  30. McGillicuddy, D.J., Anderson, L.A., Doney, S.C., and M.E. Maltrud, 2003.  Eddy-driven sources and sinks of nutrients in the upper ocean: results from a 0.1 degree resolution model of the North Atlantic.   Global Biogeochemical Cycles, 17(2), 1035, doi:10.1029/2002GB001987.
  31. McGillicuddy, D.J., Signell, R.P., Stock, C.A., Keafer, B.A., Keller, M.D., Hetland, R.D. and D.M. Anderson, 2003.  A mechanism for offshore initiation of harmful algal blooms in the coastal Gulf of Maine.  Journal of Plankton Research, 25(9), 1131-1138.
  32. Shulman, I., Haddock, S., McGillicuddy, D.J., Paduan, J. and P. Bissett, 2003.  Numerical modeling of bioluminescence on the coastal ocean.  Journal of Atmospheric and Oceanic Technology, 20, 1060-1068.
  33. *Sweeney, E.N., McGillicuddy, D.J.and K.O. Buesseler, 2003.  Biogeochemical impacts due to mesoscale eddy activity in the Sargasso Sea as measured at the Bermuda Atlantic Time Series (BATS) site.   Deep-Sea Research II, 50, 3017-3039.
  34. Anderson, D.M., Townsend, D.W., McGillicuddy, D.J. and J.T. Turner, eds., 2005. The Ecology and Oceanography of Toxic Alexandrium Blooms in the Gulf of Maine. Deep-Sea Research II, 52(19-21).
  35. Shulman, I., McGillicuddy, D.J., Moline, M.A., Haddock, S.H.D., Kindle, J.C., Nechaev, D., and M.W. Phelps, 2005.   Bioluminescence Intensity Modeling and Sampling Strategy Optimization.  Journal of Atmospheric and Oceanic Technology , 22 ,1267-1281.
  36. *He, R., McGillicuddy, D.J.,Lynch, D.R., Smith, K.W., Stock, C.A. and J.P. Manning, 2005.  Data Assimilative Hindcast of the Gulf of Maine Coastal Circulation.  Journal of Geophysical Research, 110, C10011, doi:10.1029/2004JC002807.
  37. Proehl, J.A., Lynch, D.R. and McGillicuddy, D.J.,2005  Modeling turbulent dispersion on the north flank of Georges Bank using lagrangian particle methods.  Continental Shelf Research, 25, 875-900.
  38. McGillicuddy, D.J., Anderson, D.M., Lynch, D.R. and Townsend, D.W., 2005.  Mechanisms regulating the large-scale seasonal fluctuations in Alexandrium fundyense populations in the Gulf of Maine: results from a physical-biological model. Deep-Sea Research II, 52, 2698-2714.
  39. *Stock, C.A., McGillicuddy, D.J., Solow, A.R. and Anderson, D.M., 2005.  Evaluating hypotheses for initiation and development of Alexandrium fundyense blooms in the western Gulf of Maine using a coupled physical-biological model.  Deep-Sea Research II, 52, 2715-2744.
  40. Anderson, D.M., Stock, C.A., Keafer, B.A., Bronzino, A., McGillicuddy, D.J., Keller, M.D., Thompson, B., Matrai, P.A. and J. Martin, 2005. Alexandrium fundyense cyst dynamics in the Gulf of Maine. Deep-Sea Research II,52, 2522-2542.
  41. Keafer, B.A., Churchill, J.H., McGillicuddy, D.J., and Anderson, D.M., 2005. Bloom development and transport of toxic Alexandrium fundyense populations within a nearshore coastal plume in the Gulf of Maine. Deep-Sea Research II, 52, 2674-2697.
  42. McGillicuddy, D.J.,Anderson, D.M., Solow, A.R., and D.W. Townsend, 2005. Interannual variability of Alexandrium fundyense abundance and shellfish toxicity in the Gulf of Maine. Deep-Sea Research II, 52, 2843-2855.
  43. Anderson, D.M., Keafer, B.A., McGillicuddy, D.J., Mickelson, M.J., Keay, K.E., Libby, P.S., Manning, J.P., Mayo, C.A., Whittaker, D.K., Hickey, J.M., He, R., Lynch, D.R., Smith, K.W., 2005.  Initial observations of the 2005 Alexandrium fundyense bloom in southern New England: General patterns and mechanisms. Deep-Sea Research II, 52, 2856-2876.
  44. Sedwick, P.N., Church, T.M., Bowie, A.R., Marsay, C.M., Ussher, S.J., Achilles, K.M., Lethaby, P.J., Johnson, R.J., Sarin, M.M., McGillicuddy, D.J., 2005.  Iron in the Sargasso Sea (Bermuda Atlantic Time-series Study region) during summer: Eolian imprint, spatiotemporal variability, and ecological implications. Global Biogeochemical Cycles, 19, GB4006, doi:10.1029/2004GB002445.
  45. Rothstein, L.M., Cullen, J.J., Abbott, M., Chassignet, E.P., Denman, K., Doney, S.C., Ducklow, H., Fennel, K., Follows, M., Haidvogel, D., Hoffman, E., Karl, D.M., Kindle, J., Lima, I., Maltrud, M., McClain, C., McGillicuddy, D.J., Olascoaga, M.J., Spitz, Y., Wiggert, J. and J. Yoder, 2006.   Modeling Ocean Ecosystems: The Paradigm Program.   Oceanography, 19(1), 22-51.
  46. Davis, C.S. and McGillicuddy, D.J., 2006. Transatlantic Abundance of the N2-Fixing Colonial Cyanobacterium Trichodesmium.  Science, 312, 1517-1520.
  47. Backer, L.C. and McGillicuddy, D.J., 2006. Harmful Algal Blooms: At the interface between coastal oceanography and human health. Oceanography, 19(2), 94-106.
  48. *Mouriño Carbillido, B. and McGillicuddy, D.J., 2006.  Mesoscale variability in the metabolic balance of the Sargasso Sea.  Limnology and Oceanography, 51(6), 2675-2689.
  49. *Li, X., McGillicuddy, D.J., Durbin, E.G., and P.H. Wiebe, 2006.  Biological control of the vernal population increase of Calanus finmarchicus on Georges Bank.  Deep-Sea Research II , 53 (23-24), 2632-2655, doi:10.1016/j.dsr2.2006.08.001.
  50. McGillicuddy, D.J., Anderson, L.A., Bates, N.R., Bibby, T., Buesseler, K.O., Carlson, C.A., Davis, C.S., Ewart, C., Falkowski, P.G., Goldthwait, S.A., Hansell, D.A., Jenkins, W.J., Johnson, R., Kosnyrev, V.K., Ledwell, J.R., Li, Q.P., Siegel, D.A. and D.K. Steinberg, 2007.  Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms.  Science, 316, 1021-1026.
  51. Friedrichs, M.A.M., Anderson, L., Armstrong, R., Chai, F., Christian, J., Doney, S., Dunne, J., Fujii, M., Hood, R., McGillicuddy, D.J., Schartau, M., Spitz, Y. and J. Wiggert, 2007.  Assessment of skill and portability in regional marine biogeochemical models: the role of multiple planktonic groups.  Journal of Geophysical Research, 112, C08001, doi:10.1029/2006JC003852.
  52. Ralston D.K., McGillicuddy, D.J. and D.W. Townsend, 2007. Asynchronous vertical migration and bimodal distribution of motile phytoplankton.  Journal of Plankton Research, 29(9), 803-821.
  53. *Stock, C.A., McGillicuddy, D.J., Anderson, D.M., Solow, A.M. and R.P. Signell, 2007.  Blooms of the toxic dinoflagellate Alexandrium fundyense in the western Gulf of Maine in 1993 and 1994: A comparative modeling study.  Continental Shelf Research, (27), 2486-2512.
  54. McGillicuddy, D.J., Ledwell, J.R., L.A. Anderson, 2008.  Response to Comment on "Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom."  Science, 320, 448c, doi:10.1126/science.1148974.
  55. Benitez-Nelson, C.R. and D.J. McGillicuddy, 2008.  Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An introduction to the results of the E-Flux and EDDIES programs.  Deep-Sea Research II, 55(10-13), 1133-1138.
  56. Buesseler, K.O., Lamborg, C., Cai, P., Escoube, R., Johnson, R., Pike, S., Masque, P., McGillicuddy, D.J.and E. Verdeny, 2008.  Particle fluxes associated with mesoscale eddies in the Sargasso Sea.  Deep-Sea Research II, 55(10-13), 1426-1444.
  57. Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J.and C.A. Carlson, 2008.  Microbial dynamics in cyclonic and anticyclonic mode-water eddies in the northwestern Sargasso Sea.  Deep-Sea Research II,55(10-13), 1334-1347.
  58. Jenkins, W.J., McGillicuddy, D.J., and D.E. Lott III, 2008.  The distributions of, and relationship between, 3He and nitrate in eddies.  Deep-Sea Research II, 55(10-13), 1389-1397.
  59. Ledwell, J.R., McGillicuddy, D.J., and L.A. Anderson, 2008.  Nutrient flux into an intense deep chlorophyll layer in a mode-water eddy.  Deep-Sea Research II, 55(10-13), 1139-1160.
  60. He, R. and D.J. McGillicuddy, 2008. Historic 2005 toxic bloom of Alexandrium fundyense in the west Gulf of Maine: 1. In situ Observations of Coastal Hydrography and Circulation. Journal of Geophysical Research-Oceans, 113, C07039, doi:10.1029/2007JC004601.
  61. He, R., McGillicuddy, D.J.,Keafer, B.A. and D.M. Anderson, 2008. Historic 2005 toxic bloom of Alexandrium fundyense in the western Gulf of Maine: 2. Coupled Biophysical Numerical Modeling. Journal of Geophysical Research-Oceans, 113, C07040, doi:10.1029/2007JC004602.
  62. Li, Q.P., Hansell, D.A., McGillicuddy, D.J., Bates, N.R. and R.J. Johnson, 2008.  Tracer-based assessment of the origin and biogeochemical transformation of a cyclonic eddy in the Sargasso Sea.  Journal of Geophysical Research, 113, C10006, doi:10.1029/2008JC004840.
  63. *Aretxabaleta, A.L., McGillicuddy, D.J., Smith, K.W., and D.R. Lynch, 2008. Model Simulations of the Bay of Fundy Gyre: 1. Climatological Results.  Journal of Geophysical Research, 113, C10027, doi:10.1029/2007JC004480.
  64. Dyble, J., Bienfang, P., Dusek, E., Hitchcock, G., Holland, F., Laws, E., Lerczak, J., McGillicuddy, D.J., Minnett, P., Moore, S., O’Kelly, C., Solo-Gabriel, H., and J. Wang, 2008.  Environmental controls, oceanography and population dynamics of pathogens and harmful algal blooms: Connecting sources to human exposure.  Environmental Health, 7(2):55, doi:10.1186/1476-069X-7-S2-S5.
  65. McGillicuddy, D.J., Anderson, D.M., Stock, C.A., Lynch, D.R. and D.W. Townsend, 2008.  Modeling blooms of Alexandrium fundyense in the Gulf of Maine.  In: Real-time Coastal Observing Systems for Marine Ecosystems Dynamics and Harmful Algal Blooms: Theory, Instrumentation and Modelling. United Nations Educational, Scientific and Cultural Organization. M. Babin, C.S. Roesler, J.J. Cullen, eds.
  66. Lynch, D.R., McGillicuddy, D.J., and F.E. Werner, 2009.  Skill assessment for coupled biological/physical models of marine systems.  Journal of Marine Systems, 76(1-2), 1-3.
  67. Stow, C.A., Jolliff, J., McGillicuddy, D.J., Doney, S.C., Allen, J.I., Friedrichs, M.A.M., Rose, K.A., and P. Wallhead, 2009. Skill Assessment for Coupled Biological/Physical Models of Marine Systems.  Journal of Marine Systems, 76(1-2), 4-15.
  68. Smith, K.W., McGillicuddy, D.J., and D.R. Lynch, 2009.  Parameter estimation using an ensemble smoother: the effect of the circulation in biological estimation.  Journal of Marine Systems, 76(1-2), 162-170.
  69. Manning, J.P., McGillicuddy, D.J., Pettigrew, N.R., Churchill, J.H. and L.S. Incze, 2009.  Drifter Observations of the Gulf of Maine Coastal Current.  Continental Shelf Research, 29(7), 835-845.
  70. Eden, B.R., Steinberg D.K., Goldthwait, S.A., and D.J. McGillicuddy, 2009. Zooplankton Community Structure in a Cyclonic and Mode-water Eddy in the Sargasso Sea. Deep-Sea Research, I, 56, 1757-1776.
  71. *Aretxabaleta, A.L., McGillicuddy, D.J., Smith, K.W., Manning J.P. and D.R. Lynch, 2009. Model Simulations of the Bay of Fundy Gyre: 2. Hindcasts for 2005-2007 Reveal Interannual Variability in Retentiveness. Journal of Geophysical Research, 114, C09005, doi:10.1029/2008JC004948.
  72. Li, Y., He, R., McGillicuddy, D.J., Anderson, D.M. and B.A. Keafer, 2009. Investigation of the 2006 Alexandrium fundyense bloom in the Gulf of Maine: In-situ observations and numerical modeling. Continental Shelf Research, 29, 2069-2082.
  73. McGillicuddy, D.J., Lavelle, J.W., Thurnherr, A.M., Kosnyrev, V.K. and L.S. Mullineaux, 2010. Larval dispersion along an axially symmetric mid-ocean ridge. Deep-Sea Research, I, 57, 880–892.
  74. Lin, P., Ji, R., Davis C.S. and D.J. McGillicuddy, 2010. Optimizing plankton survey strategies using Observing System Simulation Experiments. Journal of Marine Systems, 82, 187–194.
  75. McGillicuddy, D.J., deYoung, B., Doney, S.C., Glibert, P.M., Stammer, D. and F.E. Werner, 2010. Models: Tools for Synthesis in International Oceanographic Research Programs. Oceanography, 23(3), 126-139.
  76. Bienfang, P.K., DeFelice, S.V., Laws, E.A., Brand, L.E., Bidigare, R.R., Christensen, S., Trapido-Rosenthal, H., Hemscheidt, T.K., McGillicuddy, D.J., Anderson, D.M., Solo-Gabriele, H.M., Boehm A.B. and L.C. Backer, 2010. Prominent Human Health Impacts from Several Marine Microbes: History, Ecology, and Public Health Implications. International Journal of Microbiology, Volume 2011 (2011), Article ID 152815, 15 pages, doi:10.1155/2011/152815.
  77. McGillicuddy, D.J., 2010. Models of harmful algal blooms: Conceptual, empirical, and numerical approaches. Journal of Marine Systems, 83(3-4), 105-107.
  78. Lavelle, J.W., Thurnherr, A.M., Ledwell, J.R., McGillicuddy, D.J. and L.S. Mullineaux, 2010. Deep ocean circulation and transport where the East Pacific Rise at 9–10°N meets the Lamont Seamount chain. Journal of Geophysical Research - Oceans, 115, C12073, doi:10.1029/2010JC006426.
  79. *Aretxabaleta, A.L., Smith, K.W., McGillicuddy, D.J. and J. Ballabrera-Poy, 2011. Model initialization in a tidally energetic regime: A dynamically adjusted objective analysis. Ocean Modelling, 36, 219–227.
  80. Smith, K.W. and D.J. McGillicuddy, 2011. Dynamical interpolation of surface ocean chlorophyll fields via data assimilation with an iterative ensemble smoother. Journal of Marine Systems, 85, 96–105.
  81. Adams, D.K., McGillicuddy, D.J., Zamudio, L., Thurnherr, A.M., Liang, X., Rouxel, O., German, C.R. and L.S. Mullineaux, 2011. Surface-Generated Mesoscale Eddies Transport Deep-Sea Products from Hydrothermal Vents. Science, 332, 580-583.
  82. Siegel, D.A., Peterson, P., McGillicuddy, D.J., Maritorena, S. and N. B. Nelson, 2011. Bio-optical footprints created by mesoscale eddies in the Sargasso Sea. Geophysical Research Letters, 38, L13608, doi:10.1029/2011GL047660.
  83. Anderson, L.A., McGillicuddy, D.J., Maltrud, M.E., Lima, I.D. and S.C. Doney, 2011. Impact of eddy–wind interaction on eddy demographics and phytoplankton community structure in a model of the North Atlantic Ocean. Dynamics of Atmospheres and Oceans, 52, 80–94.
  84. He R., Chen K., Fennel K., Gawarkiewicz, G.G. and D.J. McGillicuddy, 2011. Seasonal and interannual variability of physical and biological dynamics at the shelfbreak front of the Middle Atlantic Bight: nutrient supply mechanisms. Biogeosciences, 8, 2935–2946.
  85. McGillicuddy, D.J., 2011. Eddies Masquerade as Planetary Waves. Science, 334, 318-319.
  86. McGillicuddy, D.J., Townsend, D.W., He, R., Keafer, B.A., Kleindinst, J.L., Li , Y., Manning, J.P., Mountain, D.G., Thomas, M.A., and D.M. Anderson, 2011. Suppression of the 2010 Alexandrium fundyense bloom by changes in physical, biological, and chemical properties of the Gulf of Maine. Limnology and Oceanography, 56(6), 2411–2426.
  87. *Zhang, W.G., Gawarkiewicz, G.G., McGillicuddy, D.J. and J.L. Wilkin, 2011. Climatological mean circulation at the New England shelf break. Journal of Physical Oceanography, 41, 1874-1893.
  88. Lavelle, J.W., Thurnherr, A.M., Mullineaux, L.S., McGillicuddy, D.J. and J.R. Ledwell, 2012. The prediction, verification, and significance of flank jets at mid-ocean ridges. Oceanography, 25(1), 277–283.
  89. Luo, Y.-W., Doney, S.C., Anderson, L.A., Benavides, M., Berman-Frank, I., Bode, A., Bonnet, S., Boström, K.H., Böttjer, D., Capone, D.G., Carpenter, E.J., Chen, Y.L., Church, M.J., Dore, J.E., Falcón, L.I., Fernández, A., Foster, R.A., Furuya, K., Gómez, F., Gundersen, K., Hynes, A.M., Karl, D.M., Kitajima, S., Langlois, R.J., LaRoche, J., Letelier, R.M., Marañón, E., McGillicuddy, D.J., Moisander, P.H., Moore, C.M., Mouriño-Carballido, B., Mulholland, M.R., Needoba, J.A., Orcutt, K.M., Poulton, A.J., Rahav, E., Raimbault, P., Rees, A.P., Riemann, L., Shiozaki, T., Subramaniam, A., Tyrrell, T., Turk-Kubo, K.A., Varela, M., Villareal, T.A., Webb, E.A., White, A.E., Wu, J., and J.P. Zehr, 2012. Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47–73, 2012, doi:10.5194/essd-4-47-2012.
  90. *Zhang, W.G., McGillicuddy, D.J., and G.G. Gawarkiewicz, 2013. Is biological productivity enhanced at the New England shelfbreak front? Journal of Geophysical Research: Oceans, 118, 517–535, doi:10.1002/jgrc.20068.
  91. Mullineaux, L.S., McGillicuddy, D.J., Mills, S.W., Kosnyrev, V.K., Thurnherr, A.M., Ledwell, J.R., and J.W. Lavelle, 2013. Active positioning of vent larvae at a mid-ocean ridge. Deep-Sea Research II, 92, 46–57.
  92. *Velo-Suárez, L., Brosnahan, M.L., Anderson, D.M., and D.J. McGillicuddy, 2013. A quantitative assessment of the role of the parasite Amoebophrya in the termination of Alexandrium fundyense blooms within a small coastal embayment. PLOS ONE, 8(12), 1-10, e81150.
  93. McGillicuddy, D.J., 2014. Do Trichodesmium spp. populations in the North Atlantic export most of the nitrogen they fix? Global Biogeochemical Cycles, 28, doi:10.1002/2013GB004652.
  94. Anderson, D.M., McGillicuddy, D.J., DeGrasse, S.L., Sellner, K.G., Bricelj, V.M., Turner, J.T., Townsend, D.W., and J.L. Kleindinst, 2014. Preface to Harmful Algae in the Gulf of Maine: Oceanography, Population Dynamics, and Toxin Transfer in the Food Web. Deep-Sea Research II, 103, 1-5.
  95. Anderson, D.M., Keafer, B.A., Kleindinst, J.L., McGillicuddy, D.J., Martin, J.L., Norton,K., Pilskaln, C.H., Smith, J.L., Sherwood, C.R., and B.Butman, 2014. Alexandrium fundyense cysts in the Gulf of Maine: Long-term time series of abundance and distribution, and linkages to past and future blooms. Deep-Sea Research II, 103, 6–26.
  96. Pilskaln, C.H., Anderson, D.M., McGillicuddy, D.J., Keafer, B.A., Hayashi,K., and K. Norton, 2014. Spatial and temporal variability of Alexandrium cyst fluxes in the Gulf of Maine: Relationship to seasonal particle export and resuspension. Deep-Sea Research II, 103, 40–54.
  97. Pilskaln, C.H., Hayashi, K., Keafer, B.A., Anderson, D.M., and D.J. McGillicuddy, 2014. Benthic nepheloid layers in the Gulf of Maine and Alexandrium cyst inventories. Deep-Sea Research II, 103, 55–65.
  98. Aretxabaleta, A.L., Butman, B., Signell, R.P., Dalyander, P.S., Sherwood, C.R., Sheremet, V.A., and D.J. McGillicuddy, 2014. Near-bottom circulation and dispersion of sediment containing Alexandrium fundyense cysts in the Gulf of Maine during 2010–2011. Deep-Sea Research II, 103, 96–111.
  99. Vahtera, E., Crespo, B.G., McGillicuddy, D.J., Olli, K., and D.M. Anderson, 2014. Alexandrium fundyense cyst viability and germling survival in light vs. dark at a constant low temperature. Deep-Sea Research II, 103, 112–119.
  100. McGillicuddy, D.J., Townsend, D.W., Keafer, B.A., Thomas, M.A., and D.M.Anderson, 2014. Georges Bank: A leaky incubator of Alexandrium fundyense blooms. Appendix A, Appendix B. Deep-Sea Research II, 103, 163–173.
  101. McGillicuddy, D.J., Brosnahan, M.L., Couture, D.A., He, R., Keafer, B.A., Manning, J.P., Martin, J.L., Pilskaln, C.H., Townsend, D.W., and D.M. Anderson, 2014. A red tide of Alexandrium fundyense in the Gulf of Maine. Deep-Sea Research II, 103, 174–184.
  102. *Li, Y., He, R., and D.J. McGillicuddy, 2014. Seasonal and interannual variability in Gulf of Maine hydrodynamics: 2002–2011. Deep-Sea Research II, 103, 210–222.
  103. Townsend, D.W., McGillicuddy, D.J., Thomas, M.A., and N.D. Rebuck, 2014. Nutrients and water masses in the Gulf of Maine–Georges Bank region: Variability and importance to blooms of the toxic dinoflagellate Alexandrium fundyense. Deep-Sea Research II, 103, 238–263.
  104. Anderson, D.M., Couture, D.A., Kleindinst, J.L., Keafer, B.A., McGillicuddy, D.J., Martin, J.L., Richlen, M.L., Hickey, J.M., and A.R. Solow, 2014. Understanding interannual, decadal level variability in paralytic shellfish poisoning toxicity in the Gulf of Maine: The HAB Index. Deep-Sea Research II, 103, 264–276.
  105. Kleindinst, J.L., Anderson, D.M., McGillicuddy, D.J., Stumpf, R.P., Fisher, K.M., Couture, D.A., Hickey, J.M., and C. Nash, 2014. Categorizing the severity of paralytic shellfish poisoning outbreaks in the Gulf of Maine for forecasting and management. Deep-Sea Research II, 103, 277–287.
  106. Deeds, J.R., Petitpas, C.M., Shue, V., White, K.D., Keafer, B.A., McGillicuddy, D.J., Milligan, P.J., Anderson, D.M., and J.T. Turner, 2014. PSP toxin levels and plankton community composition and abundance in size-fractionated vertical profiles during spring/summer blooms of the toxic dinoflagellate Alexandrium fundyense in the Gulf of Maine and on Georges Bank, 2007, 2008, and 2010: 1. Toxin levels. Deep-Sea Research II, 103, 329–349.
  107. Petitpas, C.M., Turner, J.T., Deeds, J.R., Keafer, B.A., McGillicuddy, D.J., Milligan, P.J., Shue, V., White, K.D., and D.M. Anderson, 2014. PSP toxin levels and plankton community composition and abundance in size-fractionated vertical profiles during spring/summer blooms of the toxic dinoflagellate Alexandrium fundyense in the Gulf of Maine and on Georges Bank, 2007, 2008, and 2010: 2. Plankton community composition and abundance. Deep-Sea Research II, 103, 350–367.
  108. Rouco, M., Joy-Warren, H., McGillicuddy, D.J., Waterbury, J.B., and S.T. Dyhrman, 2014. Trichodesmium sp. clade distributions in the western North Atlantic Ocean. Limnology and Oceanography, 59(6), 1899–1909.
  109. Marsay, C.M., Sedwick, P.N., Dinniman, M.S., Barrett, P.M., Mack, S.L., and D.J. McGillicuddy, 2014. Estimating the benthic efflux of dissolved iron on the Ross Sea continental shelf. Geophysical Research Letters, 41, doi:10.1002/2014GL061684.
  110. *Gaube, P., McGillicuddy, D.J., Chelton, D.B., Behrenfeld, M.J., and P.G. Strutton, 2014. Regional variations in the influence of mesoscale eddies on near-surface chlorophyll. Journal of Geophysical Research: Oceans, 119, 8195–8220, doi:10.1002/2014JC010111.
  111. D.J. McGillicuddy, 2015. Formation of intra-thermocline lenses by eddy-wind interaction. Journal of Physical Oceanography, 45, 606-612, DOI: 10.1175/JPO-D-14-0221.1.
  112. Song, H., Marshall, J., Gaube, P., and D.J. McGillicuddy, 2015. Anomalous chlorofluorocarbon uptake by mesoscale eddies in the Drake Passage region. Journal of Geophysical Research: Oceans, 120, 1065–1078, doi:10.1002/2014JC010292.
  113. Petitpas, C.M., Turner, J.T., Keafer, B.A., McGillicuddy, D.J., and D.M. Anderson, 2015. Zooplankton community grazing impact on a toxic bloom of Alexandrium fundyense in the Nauset Marsh System, Cape Cod, Massachusetts, USA. Harmful Algae, 47 (2015), 42–55.
  114. *Li, Y., He, R., Chen, K., and D.J. McGillicuddy, 2015. Variational data assimilative modeling of the Gulf of Maine in spring and summer 2010. Journal of Geophysical Research: Oceans, 120, 3522–3541, doi:10.1002/2014JC010492.
  115. *Olson, E.M., McGillicuddy, D.J., Flierl, G.R., Davis, C.S., Dyhrman, S.T., and J.B. Waterbury, 2015. Mesoscale eddies and Trichodesmium spp. distributions in the southwestern North Atlantic. Journal of Geophysical Research: Oceans, 120, doi:10.1002/2015JC010728.
  116. *Olson, E.M., McGillicuddy, D.J., Dyhrman, S.T., Waterbury, J.B., Davis C.S., and A.R. Solow, 2015. The depth-distribution of nitrogen fixation by Trichodesmium spp. colonies in the tropical-subtropical North Atlantic. Deep-Sea Research I, 104, 72–91.
  117. Townsend, D.W., Pettigrew, N.R., Thomas, M.A., Neary, M.G., McGillicuddy, D.J., and J. O’Donnell, 2015. Water masses and nutrient sources to the Gulf of Maine. Journal of Marine Research, 73, 93–122.
  118. McGillicuddy, D.J., Sedwick, P.N., Dinniman, M.S., Arrigo, K.R., Bibby, T.S., Greenan, B.J.W., Hofmann, E.E., Klinck, J.M., Smith, W.O., Mack, S.L., Marsay, C.M., Sohst, B.M., and G.L. van Dijken, 2015. Iron supply and demand in an Antarctic shelf ecosystem. Geophysical Research Letters, 42, doi:10.1002/2015GL065727.
  119. Bucklin, A., McGillicuddy, D.J., Wiebe, P.H., and C.S. Davis, 2015. Habitat usage by the cryptic copepods Pseudocalanus moultoni and P. newmani on Georges Bank (Northwest Atlantic). Continental Shelf Research, 111, 83–94, doi: 10.1016/j.csr.2015.11.001.
  120. D.J. McGillicuddy, 2016. Mechanisms of physical-biological-biogeochemical interaction at the oceanic mesoscale. Annual Review of Marine Science, 8, 125-159, DOI: 10.1146/annurev-marine-010814-015606.
  121. Song, H., Marshall, J., Munro, D.R., Dutkiewicz, S., Sweeney, C., McGillicuddy, D.J., and U. Hausmann, 2016. Mesoscale modulation of air-sea CO2 flux in Drake Passage. Journal of Geophysical Research: Oceans, 121, 6635–6649, doi:10.1002/2016JC011714.
  122. McGillicuddy, D.J., Budillon, G., and A. Kustka, 2017. Mesoscale and high-frequency variability in the Ross Sea (Antarctica): An introduction to the special issue. Journal of Marine Systems, 166, 1–3.
  123. Mack, S.L., Dinniman, M.S., McGillicuddy, D.J., Sedwick, P.N., and J.M. Klinck, 2017. Dissolved iron transport pathways in the Ross Sea: Influence of tides and horizontal resolution in a regional ocean model. Journal of Marine Systems, 166, 73-86.
  124. Ryan-Keogh, T.J., DeLizo, L.M., Smith, W.O., Sedwick, P.N., McGillicuddy, D.J., Moore, C.M., and T.S. Bibby, 2017. Temporal progression of photosynthetic-strategy in phytoplankton in the Ross Sea, Antarctica. Journal of Marine Systems, 166, 87-96.
  125. Smith, W.O., McGillicuddy, D.J., Olson, E.B., Kosnyrev, V., Peacock, E.E., and H.M. Sosik, 2017. Mesoscale variability in intact and ghost colonies of Phaeocystis antarctica in the Ross Sea: Distribution and abundance. Journal of Marine Systems, 166, 97-107.
  126. *Li, Y., McGillicuddy, D.J., Dinniman, M.S., and J.M. Klinck, 2017. Processes influencing formation of low-salinity high-biomass lenses near the edge of the Ross Ice Shelf. Journal of Marine Systems, 166, 108-119.
  127. *Hausmann, U., McGillicuddy, D.J., and J. Marshall, 2017. Observed mesoscale eddy signatures in Southern Ocean surface mixed-layer depth. Journal of Geophysical Research: Oceans, 122, 617–635, doi:10.1002/2016JC012225.
  128. *Gaube, P., Barceló, C., McGillicuddy, D.J., Domingo, A., Miller, P., Giffoni, B., Marcovaldi, N., and Y. Swimmer, 2017. The use of mesoscale eddies by juvenile loggerhead sea turtles (Caretta caretta) in the southwestern Atlantic. PLoS ONE, 12(3), 1-19, e0172839.doi:10.1371/journal.pone.0172839.
  129. *Gaube, P., and D.J. McGillicuddy, 2017. The influence of Gulf Stream eddies and meanders on near-surface chlorophyll. Deep–Sea Research I, 122, 1–16.
  130. Marsay, C.M., Barrett, P.M., McGillicuddy, D.J., and P.N. Sedwick, 2017. Distributions, sources, and transformations of dissolved and particulate iron on the Ross Sea continental shelf during summer. Journal of Geophysical Research: Oceans, 122, 6371–6393, doi:10.1002/2017JC013068.
  131. Stanley, R.H.R., McGillicuddy, D.J., Sandwith, Z.O., and H.M. Pleskow, 2017. Submesoscale hotspots of productivity and respiration: Insights from high-resolution oxygen and fluorescence sections. Deep-Sea Research I, 130, 1–11.
  132. Martin-Platero, A.M., Cleary, B., Kauffman, K., Preheim, S.P., McGillicuddy, D.J., Alm, E.J., and M.F. Polz., 2018. High resolution time series reveals cohesive but short-lived communities in coastal plankton. Nature Communications, 9:266, 1-11, DOI: 10.1038/s41467-017-02571-4.
  133. *Gaube, P., Braun, C.D., Lawson, G.L., McGillicuddy, D.J., Penna, A.D., Skomal, G.B., Fischer, C., and S.R. Thorrold, 2018. Mesoscale eddies influence the movements of mature female white sharks in the Gulf Stream and Sargasso Sea. Scientific Reports, 8:7363 | DOI:10.1038/s41598-018-25565-8.
  134. *Song, H., Long, M.C. , Gaube, P., Frenger, I., Marshall, J., and D.J. McGillicuddy, 2018. Seasonal variation in the correlation between anomalies of sea level and chlorophyll in the Antarctic Circumpolar Current. Geophysical Research Letters, 45, https://doi.org/10.1029/2017GL076246.
  135. Flynn, K.J., and D.J. McGillicuddy, 2018. Modeling marine harmful algal blooms: current status and future prospects. Shumway, Sandra, ed. Harmful algal blooms: a compendium desk reference, chapter 3, 115-133. John Wiley and Sons.
  136. *Xu, G., McGillicuddy, D.J., Mills, S.W., and L.S. Mullineaux, 2018. Dispersal of hydrothermal vent larvae at East Pacific Rise 9–10°N Segment. Journal of Geophysical Research: Oceans, 123, 7877–7895. https://doi.org/10.1029/2018JC014290.
  137. Fassbender, A.J., Bourbonnais, A., Clayton, S., Gaube, P., Omand, M., Franks, P.J.S., Altabet, M.A., and D.J. McGillicuddy, 2018. Interpreting mosaics of ocean biogeochemistry. Eos, 99, https://doi.org/10.1029/2018EO109707.
  138. *Gaube, P., McGillicuddy, D.J., and A.J. Moulin, 2019. Mesoscale eddies modulate mixed layer depth globally. Geophysical Research Letters, 46.https://doi.org/10.1029/2018GL080006/
  139. McGillicuddy, D.J., and P.J.S. Franks, 2019. Models of Plankton Patchiness. In Cochran, J. Kirk; Bokuniewicz, J. Henry; Yager, L. Patricia (eds.) Encyclopedia of Ocean Sciences,  3rd Edition, vol.[5],  pp. 536-546. Oxford: Elsevier.
  140. Mack, S.L., Dinniman, M.S., Klinck, J.M., McGillicuddy, D.J., and L. Padman, 2019. Modeling ocean eddies on Antarctica's cold water continental shelves and their effects on ice shelf basal melting. Journal of Geophysical Research: Oceans, 124, 1-18. https://doi.org/10.1029/2018JC014688.
  141. *Clark, S., Hubbard, K., Anderson, D., McGillicuddy, D.J., Ralston, D., and D. Townsend, 2019. Pseudo-nitzschia bloom dynamics in the Gulf of Maine: 2012-2016. Harmful Algae, 88 (2019) 101656, 1-14.
  142. Song, H., Marshall, J., Campin, J-M., and D.J. McGillicuddy, 2019. Impact of near-inertial waves on vertical mixing and air-sea CO2 fluxes in the Southern Ocean. Journal of Geophysical Research: Oceans, 124, 4605–4617. https://doi.org/10.1029/2018JC014928.
  143. Resplandy, L., Lévy, M., and D.J. McGillicuddy, 2019. Effects of eddy-driven subduction on ocean biological carbon pump. Global Biogeochemical Cycles, 33, 1-14. https://doi.org/10.1029/2018GB006125.
  144. Song, H., Marshall, J., McGillicuddy, D.J., and H. Seo. Impact of current-wind interaction on vertical processes in the Southern Ocean, 2020.  Journal of Geophysical Research: Oceans, 125, 4, 1-14, https://doi.org/10.1029/2020JC016046.
  145. McGillicuddy, D.J., Resplandy L., and M. Lévy, 2019. Estimating particle export flux from satellite observations: Challenges associated with spatial and temporal decoupling of production and export.  Journal of Marine Research, 77, Supplement, 247–258, 2019, Volume of  The Sea: The Current and Future Ocean.
  146. Barone, B., Coenen, A.R., Beckett, S.J., McGillicuddy, D.J., Weitz, J.S., and D.M. Karl, 2019. The ecological and biogeochemical state of the North Pacific Subtropical Gyre is linked to sea surface height. Journal of Marine Research, 77, Supplement, 215–245, 2019, Volume of  The Sea: The Current and Future Ocean.
  147. Sedwick, P.N., Bowie, A.R., Church, T.M., Cullen, J.T., Johnson, R.J., Lohan, M.C., Marsay, C.M., McGillicuddy, D.J., Sohst, B.M., Tagliabue, A., and S.J. Ussher, 2020. Dissolved iron in the Bermuda region of the subtropical North Atlantic Ocean: Seasonal dynamics, mesoscale variability, and physicochemical speciation. Marine Chemistry 219 (2020) 103748, 1-15.
  148. Li, Y., Stumpf, R.P., McGillicuddy, D.J., and R. He, 2020. Dynamics of an intense Alexandrium catenella red tide in the Gulf of Maine: satellite observations and numerical modeling. Harmful Algae 99 (2020) 101927, 1-12.
  149. Zhang, W., and D.J. McGillicuddy, 2020. Warm Spiral Streamers over Gulf Stream Warm-Core Rings. Journal of Physical Oceanography, 50, 2020, 3331-3351, DOI: 10.1175/JPO-D-20-0035.1.
  150. Smith, W.O., Zhang, W.G., *Hirzel, A., Stanley, R.M., Meyer, M.G., Sosik, H., Alatalo, P., *Oliver, H., Sandwith, Z., Crockford, E.T., Peacock, E.E., Mehta, A., and D.J. McGillicuddy, 2021. A Regional, Early Spring Bloom of Phaeocystis pouchetii on the New England Continental Shelf. Journal of Geophysical Research: Oceans, 126, e2020JC016856. https://doi. org/10.1029/2020JC016856.
  151. Lapointe, B.E., Brewton, R.A., Herren, L.W., Wang, M., Hu, C., McGillicuddy, D.J., Lindell, S., Hernandez, F.J., and P. L. Morton, 2021. Nutrient content and stoichiometry of pelagic Sargassum reflects increasing nitrogen availability in the Atlantic Basin. Nature communications, (2021) 12:3060, https://doi.org/10.1038/s41467-021-23135-7.
  152. *Oliver, H., Zhang, W.G., Smith, W.O., Alatalo, P., Chappell, P.D., *Hirzel, A., Selden, C.R., Sosik, H.M., Stanley, R.H.R., Zhu, Y., and D.J. McGillicuddy, 2021. Diatom hotspots driven by western boundary current instability. Geophysical Research Letters, 48, e2020GL091943. https://doi. org/10.1029/2020GL091943.
  153. *Clark, S., Hubbard, K.A., McGillicuddy, D.J., Ralston, D.K., and S. Shankar, 2021. Investigating Pseudo-nitzschia australis introduction to the Gulf of Maine with observations and models. Continental Shelf Research, Volume 228, 1 October 2021, 104493.  https://doi.org/10.1016/j.csr.2021.104493.
  154. Kwak, K., Song, H., Marshall, J., Seo, H., and D.J. McGillicuddy, 2021. Suppressed pCO2 in the Southern Ocean due to the interaction between current and wind. Journal of Geophysical Research: Oceans, 126, 12, http://dx.doi.org/10.1029/2021JC017884.
  155. *Oliver, H., Zhang, W.G., Archibald, K.M., Hirzel, A.J., Smith, W.O., Sosik, H.M., Stanley, R.H.R., and D.J. McGillicuddy, 2022. Ephemeral surface chlorophyll enhancement at the New England shelf break driven by Ekman restratification. Journal of Geophysical Research: Oceans, 127, e2021JC017715. https://doi.org/10.1029/2021JC017715.
  156. *Clark, S., Hubbard, K.A., Ralston, D.K., McGillicuddy, D.J., Stock, C., Alexander, M.A., and E. Curchitser, 2022. Projected effects of climate change on Pseudo-nitzschia bloom dynamics in the Gulf of Maine. Journal of Marine Systems, Volume 230, June 2022, 103737.
  157. Zhang, Y., Hu, C., Kourafalou, V.H., Liu, Y., McGillicuddy, D.J., Barnes, B.B., and J.M. Hummon, 2022. Physical Characteristics and Evolution of a Long-Lasting Mesoscale Cyclonic Eddy in the Straits of Florida. Frontiers in Marine Science, 30 March 2022 | https://doi.org/10.3389/fmars.2022.779450.
  158. Zhang, W., Alatalo, P., Crockford, T., Hirzel, A.J., Meyer, M.G., Oliver, H., Peacock, E., Petitpas, C.M., Sandwith, Z., Smith, W.O., Sosik, H.M., Stanley, R.H.R., Stevens, B.L.F., Turner, J.T., and D.J. McGillicuddy, 2023. Cross-shelf exchange associated with a shelf-water streamer at the Mid-Atlantic Bight shelf edge. Progress in Oceanography, Volume 210, 102931.
  159. Zhang, Y., Hu, C., Barnes, B.B., Liu, Y., Kourafalou, V.H., McGillicuddy, D.J., Cannizzaro, J.P., English, D.C., and C. Lembke, 2023. Bio-Optical, Physical, and Chemical Properties of a Loop Current Eddy in the Gulf of Mexico. Journal of Geophysical Research: Oceans, Volume 128, Issue 3, e2022JC018726.
  160. He, Q., McGillicuddy, D.J., Xing, X., Cai, S., Zhan, W., He, Y., Xu, J., and H. Zhan, 2023. Subsurface phytoplankton responses to ocean eddies can run counter to satellite-based inference from surface properties in subtropical gyres. Progress in Oceanography, Volume 218, November 2023, 103118.
  161. *Hirzel, A.J., Alatalo, P., Oliver, H., Petitpas, C.M., Turner, J.T., Zhang, W.G., and D.J. McGillicuddy, 2023. High resolution analysis of plankton distributions at the Middle Atlantic Bight shelf-break front. Continental Shelf Research, Volume 267, 15 September 2023, 105113.
  162. McGillicuddy, D.J., Morton, P.L., Brewton, R.A., Hu, C., Kelly, T.B., Solow, A.R., and B.E. Lapointe, 2023. Nutrient and arsenic biogeochemistry of Sargassum in the western Atlantic. Nature Communications, 14, 6205 (2023). https://doi.org/10.1038/s41467-023-41904-4.
  163. Oliver, H., McGillicuddy, D.J., Krumhardt, K.M., Long, M.C., Bates, N.R, Bowler, B.C., Drapeau, D.T., and W.M. Balch, 2023. Environmental drivers of coccolithophore growth in the Pacific sector of the Southern Ocean. Global Biochemical Cycles, Volume 37, Issue 11, e2023GB007751, https://doi.org/10.1029/2023GB007751.
  164. Zhang, Y., Hu, C., McGillicuddy, D.J., Barnes, B.B., Liu, Y., Kourafalou, V.H., Zhang, S., and F.J. Hernandez, 2024. Pelagic Sargassum in the Gulf of Mexico driven by ocean currents and eddies. Elsevier, Harmful Algae, Volume 132, February 2024, 102566.
  165. Castillo Cieza, S.A., Stanley, R.H.R, Marrec, P., Fontaine, D.N., Crockford, E.T., McGillicuddy, D.J., Mehta, A., Menden-Deuer, S., Peacock, E.E., Rynearson, T.A., Sandwith, Z.O., Zhang, W., and H.M. Sosik, 2024. Unusual Hemiaulus bloom influences ocean productivity in Northeastern US Shelf waters. Biogeosciences, Articles, Volume 21, issue 5, BG, 21, 1235–1257, 2024, https://doi.org/10.5194/bg-21-1235-2024.
  166. Selden, C.R., Mulholland, M.R., Crider, K.E., Clayton, S., Macías-Tapia, A., Bernhardt, P., McGillicuddy, D.J., Zhang, W.G., and P.D. Chappell. Nitrogen fixation at the Mid-Atlantic Bight shelfbreak and transport of newly-fixed nitrogen to the slope sea, 2024. Journal of Geophysical Research: Oceans, 129, e2023JC020651. https://doi.org/10.1029/2023JC020651.
  167. Zhang, Y., Hu, C., McGillicuddy, D.J., Liu, Y., Barnes, B.B., and V.H. Kourafalou, 2024. Mesoscale eddies in the Gulf of Mexico: A three-dimensional characterization based on global HYCOM. Deep Sea Research Part II, Volume 215, June 2024, 105380.

Submitted Publications

  1. *Hirzel, A.J., Zhang, W.G, Gawarkiewicz, G.G., and D.J. McGillicuddy. Upwelling in cyclonic and anticyclonic eddies at the Middle Atlantic Bight shelf-break front. Submitted, Journal of Geophysical Research: Oceans.
  2. Greenan, B.J.W, Dinniman, M.S., McGillicuddy, D.J., Sedwick, P.N., Mack, S.L., and W.O. Smith. The relative contribution of deep and shallow benthic sources to iron supply in the Ross Sea, with specific emphasis on Ross Bank. Submitted, Deep-Sea Research II, special issue.
  3. Oliver, H., Krumhardt, K.M., McGillicuddy, D.J., Mitchell, C., and W.M. Balch. Mechanisms regulating coccolithophore dynamics in the Great Calcite Belt in the Southern Ocean in the Community Earth System Model. Submitted, Global Biogeochemical Cycles.
  4. Buesseler, K., Bianchi, D., Chai, F., Cullen, J.T., Estapa, M., Hawco, N., John, S., McGillicuddy, D., Morris, P.J., Nawaz, S., Nishioka, J., Pham, A., Ramakrishna, K., Siegel, D., Smith, S., Steinberg, D.K., Turk-Kubo, K.A., Twining, B., Webb, R., Wells, M., White, A., Xiu, P., and J.E. Yoon. Next steps for assessing ocean iron fertilization for marine carbon dioxide removal. Submitted, Frontiers.
  5. Zhu, Y., Mulholland, M., Selden, C., McGillicuddy, D., Mottram, J., Chappell, P.D., Zhang, W., Granger, J., Meyer, M., Crider, K., Bernhardt, P., Oliver, H., and S. Clayton. Contrasting nitrogen dynamics across the Mid-Atlantic Bight shelfbreak front: insights from nitrate dual isotopes and nitrifier gene abundance. Submitted, Limnology and Oceanography.

Edited Volumes

  1. Haidvogel, D.B., Malanotte-Rizzoli, P. and D.J. McGillicuddy, eds. Theory and Modeling of Ocean Circulation, Data Assimilation and Interdisciplinary Applications: A Tribute to Professor Allan R. Robinson.  Dynamics of Atmospheres and Oceans 29 (2-4), July 1999, 469 pp.
  2. Anderson, D.M.,Townsend, D.W., McGillicuddy, D.J., and J.T. Turner, eds. Oceanography of Toxic Alexandrium Blooms in the Gulf of Maine. Deep-Sea Research II, 52 (19-21), 2005.
  3. Benitez-Nelson, C.R. and D.J. McGillicuddy, eds.  Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: Results from the E-Flux and EDDIES programs. Deep-Sea Research II, 55 (10-13), 2008.
  4. Lynch, D.R., McGillicuddy, D.J., and F.E. Werner, eds. Skill assessment for coupled biological/physical models of marine systems.  Journal of Marine Systems, 76 (1-2), 2009.
  5. McGillicuddy, D.J., ed. Models of harmful algal blooms: Conceptual, empirical, and numerical approaches. Journal of Marine Systems, 83 (3-4), 2010.
  6. Anderson, D.M., McGillicuddy, D.J., DeGrasse, S.L., Sellner, K.G., Bricelj, V.M., Turner, J.T., Townsend, D.W., and J.L. Kleindinst, eds. Harmful Algae in the Gulf of Maine: Oceanography, Population Dynamics, and Toxin Transfer in the Food Web. Deep-Sea Research II, 103, 2014.
  7. McGillicuddy, D.J., Budillon, G., and A. Kustka, eds. Mesoscale and high-frequency variability in the Ross Sea (Antarctica). Journal of Marine Systems, 166, 2017
  8. Glibert, P.M., Altabet, M.A., Montoya, J.P., and D.J. McGillicuddy, 2019. Advancing science from plankton to whales—Celebrating the contributions of James J. McCarthy. The sea: the current and future ocean. Journal of Marine Research, 77, Supplement, 1–8.

Book

  1. Lynch, D.R., Greenberg, D.A., Bilgili, A., McGillicuddy, D.J., Manning, J.P., and A.L. Aretxabaleta, 2014. Particles in the Coastal Ocean: Theory and Applications. Cambridge University Press, ISBN: 9781107061750.

Technical Reports and Non-Refereed Publications

  1. Carton, J.A. and D.J. McGillicuddy, 1985.  Comprehensive maps of POLYMODE streamfunction.  Reports in Meteorology and Oceanography, Number 21, Harvard University.
  2. 1985-June 1986.  Reports in Meteorology and Oceanography, Number 22, Harvard University.
  3. DeMey, P., Carton, J.A., Menard, Y., and D.J. McGillicuddy, 1986.  Comparison of satellite altimetry with POLYMODE observations.  Ocean Modeling, Number 67.
  4. McGillicuddy, D.J., 1987.  Quasigeostrophic modeling of isolated vortices.  Reports in Meteorology and Oceanography, Number 27, Harvard University.
  5. Robinson, A.R., Spall, M.A., Leslie, W.G., Walstad, L.J., and D.J. McGillicuddy, 1987.  Gulfcasting: dynamical forecasting experiments for Gulf Stream rings and meanders November 1985 - June 1986.  Reports in Meteorology and Oceanography, Number 22, Harvard University.
  6. McGillicuddy, D.J., 1989.  One Dimensional Numerical Simulation of New Primary Production: Lagrangian Eulerian Formulations.  Reports in Meteorology and Oceanography, Number 36, Harvard University.
  7. McGillicuddy, D.J., 1989.  Real time nowcasting and forecasting of the mesoscale eddy field in the vicinity of the OFP site on the cruise CI8809.  Reports in Meteorology and Oceanography, Number 37, Harvard University.
  8. McGillicuddy, D.J., 1997.  Mesoscale ocean dynamics and biological productivity.  U.S. JGOFS North Atlantic Ocean Process Study Planning Workshop Report, H. Ducklow, J. Marra, and C. Goyet, eds.  U.S. JGOFS Report Number 20, U.S. JGOFS Planning Office, Woods Hole, MA, pp. 31-34.
  9. McGillicuddy, D.J., A.R. Robinson and J.J. McCarthy, 1997.  Coupled physical and biological modeling of the spring bloom in the North Atlantic.  Report of the Second Meeting of the International GLOBEC Numerical Modeling Working Group on Interdisciplinary Model Formulation and Parameterization, Nantes, France, 17-20 July 1995, Volume 2, GLOBEC.INT.
  10. McGillicuddy, D.J., 1998.  New evidence for the impact of mesoscale eddies on biogeochemical cycling in the Sargasso Sea. U.S. JGOFS Synthesis and Modeling Project Planning Workshop Report, S.C. Doney and J.L. Sarmiento, eds.  U.S. JGOFS Planning Report Number 21, U.S. JGOFS Planning Office, Woods Hole, MA, pp. 66-70.
  11. Steele, J.H. and D.J. McGillicuddy, 1998.  Community structure and scales of variability. U.S. JGOFS Synthesis and Modeling Project Planning Workshop Report, S.C. Doney and J.L. Sarmiento, eds.  U.S. JGOFS Planning Report Number 21, U.S. JGOFS Planning Office, Woods Hole, MA, pp. 78-80.
  12. Lynch, D.R. and D.J. McGillicuddy, 1998. Globec researchers model physical/biological interactions on Georges Bank. RCRC Newsletter, Volume 2, Number 2. Rhinehart Coastal Research Center, Woods Hole Oceanographic Institution, Woods Hole, MA, pp. 7, 11.
  13. McGillicuddy, D.J., Johnson, R., Siegel, D.A., and N. Bates, 1998.  Validation cruises document links between mesoscale physical and biogeochemical variations around BATS site. U.S. JGOFS News, Volume 9, Number 1. U.S. JGOFS Planning Office, Woods Hole Oceanographic Institution, Woods Hole, MA, pp. 7-8.
  14. Yoder, J.A., Bakun, A., and D.J. McGillicuddy, 1998.  Structure over large distances and long times.  White Paper for Ocean Ecology: Understanding and Vision for Research (OEUVRE), National Science Foundation Planning Workshop for Biological Oceanography.  Available at: http://joss.ucar.edu/project/oce_workshop/oeuvre/.
  15. Signell, R.P. and D.J. McGillicuddy, 1999.  Scientists model harmful algal blooms for ECOHAB-GOM. RCRC Newsletter, Volume 3, Number 1. Rhinehart Coastal Research Center, Woods Hole Oceanographic Institution, Woods Hole, MA, p. 6.
  16. McGillicuddy, D.J. and V.K. Kosnyrev, 2000. U.S. Globec Georges Bank: Real-time modeling on cruises EN323 and EN324. U.S. GLOBEC Georges Bank Program Office, Woods Hole, MA. Available at: http://globec.whoi.edu/globec-dir/reports/en323_en324/real-time_modeling_report.html.
  17. Anderson, D.M., Signell, R.P. and D.J. McGillicuddy, 2001. Modeling toxic Alexandriumdynamics in the Gulf of Maine: progress to date.  In:  Prevention and Management of Harmful Algal Blooms in the South China Sea. School of Science and Technology, The Open University of Hong Kong.  K.C. Ho and Z.D. Wang, eds
  18. Hansell, D.A. and D.J. McGillicuddy, 2001.  S2O2: Coordinating long-term time-series studies in the Southwest North Atlantic.  U.S. JGOFS News, Volume 11, Number 2. U.S. JGOFS Planning Office, Woods Hole Oceanographic Institution, Woods Hole, MA 02543.
  19. McGillicuddy, D.J., 2001. Biological data assimilation.  In: Ocean sciences at the new millennium.  Report of the Ocean Sciences Decadal Committee, National Science Foundation.  Available at: http://www.ofps.ucar.edu/joss_psg/publications/decadal/.
  20. Hansell, D.A. and D.J. McGillicuddy, 2001.  The Sargasso Sea Ocean/Atmosphere Observatory.  Proceedings of a Workshop, March 6-8, 2001.  Bermuda Biological Station for Research, Inc., St. Georges, Bermuda.
  21. Anderson, D.M. and D.J. McGillicuddy, 2002.  The ecology and oceanography of toxic Alexandriumblooms in the Gulf of Maine: Insights from model simulations.  Proceedings of the 2nd Irish Marine Biotoxin Science Workshop, October 2001.  Marine Institute Headquarters, Galway Technology Park, Parkmore, Galway, Ireland.
  22. OITI, 2002.  An information technology infrastructure plan to advance ocean sciences.  Report of the Ocean Information Technology Infrastructure Committee, Office of Naval Research and National Science Foundation.  Available at: http://www.geo-prose.com/oiti/.
  23. Liu, W.T., Atlas, R., Chelton, D.B., Chen, D., Chen, S., Dunbar, R.S., Freilich, M.H., Fu, R., Fukumori, I., Gille, S., Hawkins, J., Lee, T., Long, D.G., McGillicuddy, D.J., McDonald, K.C., Milliff, R.F. and L. Yu, 2003.  Scientific Opportunities Provided by SeaWinds in Tandem.  JPL Publication 03-12.  National Aeronautics and Space Administration, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, 39 pp.
  24. Bucklin, A., McGillicuddy, D.J., and C.A. Manning, 2003. Biological-physical processes determining Pseudocalanusspp. (Crustacea; Copepoda) distribution and abundance on Georges Bank in the Northwest Atlantic, ICES CM 2003 / P:36.
  25. McGillicuddy, D.J.,Stock, C.A., Anderson, D.M. and Signell, R.P., 2003. Hindcasting blooms of the toxic dinoflagellate Alexandrium spp. In the western Gulf of Maine.  In: Ecological Forecasting: New Tools for Coastal and Ecosystem Management, N.J. Valette-Silver and D. Scavia, Eds. NOAA Technical Memorandum NOS NCCOS 1, 116pp.
  26. Anderson, D.M., R.P. Signell, and D.J. McGillicuddy. 2003. Modeling toxic Alexandrium dynamics in the Gulf of maine: progress to date. pp. 277-282, in: Recent Advances in the Prevention and management of harmful Algal Blooms in the South China Sea, Ho, K.C., Lu, S., Yu, T.-S., and Wong, K.-F. (eds.), The Association on harmful Algal Blooms in the South China Sea, The Open University of Hong Kong, Kowloon, Hong Kong.
  27. Anderson, D.M., Libby, P.S., Mickelson, M.J., Borkman, D.G., He, R., McGillicuddy, D.J.,  2007.  The 2005 New England red tide of Alexandrium fundyense: observations, causes, and potential outfall linkages.  Boston: MWRA Report 2007-10.  85 pp.
  28. Anderson, D.M., McGillicuddy, D.J., Keafer B.A., He, R. and D.W. Townsend, 2010. Bloom dynamics of the red tide dinoflagellate Alexandrium fundyense in the Gulf of Maine: a synthesis and progress towards a forecasting capability. ICES CM 2010/N:01.
  29. GEOHAB, 2011. GEOHAB Modelling: A Workshop Report. D.J. McGillicuddy, Jr., P.M. Glibert, E. Berdalet, C. Edwards, P. Franks, and O. Ross (eds). IOC and SCOR, Paris and Newark, Delaware. 85 pp.
  30. Anderson, D.M., McGillicuddy, D.J., Keafer, B.A., He, R. and D.W. Townsend. Population dynamics of Alexandrium fundyense in the Gulf of Maine: outlook for improved management and forecasting. Proceedings of the 14th International conference on Harmful Algae, Crete, Greece, 2010.
  31. McGillicuddy, D.J., Hofmann, E.E., Smith, W.O., Greenan, B., and T.S. Bibby, 2012. PRISM-RS: Processes Regulating Iron Supply at the Mesoscale in the Ross Sea (PRISM-RS). IMBER Newsletter Issue n°20 - May 2012.
  32. Buesseler, K.O. and 19 others. Exploring Ocean Iron Solutions. 2023. Paths Forward for Exploring Ocean Iron Fertilization. Woods Hole, MA. doi: http://10.1575/1912/67120.